Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B17
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.8  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 751  PPPPPXXXPPPP 786
            PPPPP   PPPP
Sbjct: 1707 PPPPPMSVPPPP 1718


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +2

Query: 743 KIXPPPPXGXXPPPPXXKKXXFFXGGGXXKKKKXPPPP 856
           K  PPPP    PPP    +     G G       PPPP
Sbjct: 308 KKRPPPP----PPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 528 LGGPPXXFXXKXPPPXXGFWGGXPPXKXXP 617
           L GP        PPP  GF  G PP    P
Sbjct: 117 LAGPVRGVGYTAPPPPAGFGRGAPPPGFRP 146



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 565 PPPXXGFGGGXPPXKXXP 618
           PPP  GFG G PP    P
Sbjct: 129 PPPPAGFGRGAPPPGFRP 146


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
 Frame = +1

Query: 751 PPPPPXXXPP--PPP 789
           PPPPP   PP  PPP
Sbjct: 12  PPPPPGFEPPSQPPP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,803
Number of Sequences: 5004
Number of extensions: 27200
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)