BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP01_F_B17 (895 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.6 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.8 SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 4.8 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.3 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 28.3 bits (60), Expect = 1.6 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = +1 Query: 751 PPPPPXXXPPPP 786 PPPPP PPPP Sbjct: 1707 PPPPPMSVPPPP 1718 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 26.6 bits (56), Expect = 4.8 Identities = 14/38 (36%), Positives = 15/38 (39%) Frame = +2 Query: 743 KIXPPPPXGXXPPPPXXKKXXFFXGGGXXKKKKXPPPP 856 K PPPP PPP + G G PPPP Sbjct: 308 KKRPPPP----PPPSRRNRGKPPIGNGSSNSSLPPPPP 341 >SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces pombe|chr 1|||Manual Length = 147 Score = 26.6 bits (56), Expect = 4.8 Identities = 12/30 (40%), Positives = 12/30 (40%) Frame = +3 Query: 528 LGGPPXXFXXKXPPPXXGFWGGXPPXKXXP 617 L GP PPP GF G PP P Sbjct: 117 LAGPVRGVGYTAPPPPAGFGRGAPPPGFRP 146 Score = 26.6 bits (56), Expect = 4.8 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = +1 Query: 565 PPPXXGFGGGXPPXKXXP 618 PPP GFG G PP P Sbjct: 129 PPPPAGFGRGAPPPGFRP 146 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 25.8 bits (54), Expect = 8.3 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%) Frame = +1 Query: 751 PPPPPXXXPP--PPP 789 PPPPP PP PPP Sbjct: 12 PPPPPGFEPPSQPPP 26 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,924,803 Number of Sequences: 5004 Number of extensions: 27200 Number of successful extensions: 99 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 82 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 450492750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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