Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B16
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103...    83   2e-16
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305     75   6e-14
03_05_0625 - 26225201-26225879,26226706-26227553                       29   5.0  
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381...    28   8.7  
06_01_0994 + 7719974-7721323                                           28   8.7  
03_02_0617 - 9886496-9886888,9886984-9887310                           28   8.7  

>05_03_0389 -
           13409848-13409964,13410049-13410114,13410209-13410325,
           13410822-13410893,13410979-13411258,13411528-13411730,
           13412230-13412316,13412705-13412758,13413042-13413221,
           13414402-13414576,13414628-13414918,13414923-13415344
          Length = 687

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
 Frame = -3

Query: 836 YXFAXLTGTWTS-CWCSAT*GTELQSILPRGAXXMAQVXFDEAAEYSDGTPAXASQLAKD 660
           Y FA LTG            G       P GA  M ++  D A EY DGTPA  +Q+ KD
Sbjct: 572 YVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPATEAQMGKD 631

Query: 659 VATXLKWCSEPELDDRRQMTIKAIGMFSMLAAVV*YYKRHKWSTLKFRK 513
           V + L W +EPE+++R+ M +K I + S+      YY+R +WS LK RK
Sbjct: 632 VVSFLSWAAEPEMEERKLMGVKWIFLLSLALLQAAYYRRMRWSVLKSRK 680


>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
          Length = 82

 Score = 75.4 bits (177), Expect = 6e-14
 Identities = 33/75 (44%), Positives = 47/75 (62%)
 Frame = -3

Query: 737 MAQVXFDEAAEYSDGTPAXASQLAKDVATXLKWCSEPELDDRRQMTIKAIGMFSMLAAVV 558
           M ++  D A EY DGTPA  +Q+ KDV + L W +EPE+++R+ M +K I + S+     
Sbjct: 1   MPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFLLSLALLQA 60

Query: 557 *YYKRHKWSTLKFRK 513
            YY+R KWS  K RK
Sbjct: 61  AYYRRMKWSVYKSRK 75


>03_05_0625 - 26225201-26225879,26226706-26227553
          Length = 508

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 595 KLSACSPCLPPLSNTTSGTSG 533
           + SACS CLPP  + TS +SG
Sbjct: 186 RCSACSCCLPPPGSGTSSSSG 206


>06_03_1080 +
           27436389-27436742,27437573-27437804,27437911-27438159,
           27438467-27438517,27438676-27438936,27439019-27439071,
           27439201-27439315,27441666-27441920,27442423-27443480
          Length = 875

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 559 TTAASMENMPIALMVICRRSSSSGSEHHFXKVATSLASC--DAXAG 690
           + AAS E+   A+ VI   SSS GS  H     T+ +SC  DA AG
Sbjct: 738 SAAASGEDE--AMSVIPATSSSGGSNQHAFDAGTTTSSCEIDATAG 781


>06_01_0994 + 7719974-7721323
          Length = 449

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 589 IALMVICRRSSSSGSEHHFXKVATSLASCDAXAGVPSLYSAASSNXTCA 735
           ++  V+ R  +SSG  H    +A +   CDA  G+  + S  SS  T A
Sbjct: 243 VSAAVVLRELASSGDRHALEAIARAHGMCDALVGL--VTSPVSSQATKA 289


>03_02_0617 - 9886496-9886888,9886984-9887310
          Length = 239

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = -1

Query: 637 AQNPNWTTVGR*PSKLSACSPCLPP------LSNTTSGTSGPRSSLEXXP 506
           AQ P++      PS++S+CSP  PP      L   TS +S P +++   P
Sbjct: 14  AQQPHYGRSVSPPSRVSSCSPPPPPVGTASLLVGNTSSSSSPTTTVVLSP 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,867
Number of Sequences: 37544
Number of extensions: 326655
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)