Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B16
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)           54   1e-07
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  30   2.9  
SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)                30   2.9  
SB_43261| Best HMM Match : TSP_1 (HMM E-Value=0.0026)                  28   8.8  

>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
          Length = 127

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 25/42 (59%), Positives = 28/42 (66%)
 Frame = -3

Query: 755 PRGAXXMAQVXFDEAAEYSDGTPAXASQLAKDVATXLKWCSE 630
           P  A  MAQ  ++E  EY DGTPA  SQLAKDV T LKW +E
Sbjct: 30  PGQAIGMAQALYNEIIEYEDGTPATTSQLAKDVCTFLKWSAE 71



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 805 PPAGVVLREGQNYNPYFPG 749
           PPAGV +R+   +N YFPG
Sbjct: 13  PPAGVEIRDDLYFNAYFPG 31


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 577 PCLPPLSNTTSGTSGPRSSLEXXPTSP 497
           P L PLS+T S T   R +++  PTSP
Sbjct: 826 PSLSPLSSTDSSTPRSRRTIDLPPTSP 852


>SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)
          Length = 683

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -1

Query: 637 AQNPNWTTVGR*PSKLSACSPCLPPLSNTTSGTSGPRSSLEXXPTSPFLRNKRXQLTSSX 458
           +Q+P      +   K S  S CL P+S+T+  TS   SS++       L  +  Q  +  
Sbjct: 36  SQSPYRQQTAQVAKKFSNVSTCLTPVSSTSERTSESPSSMDGLLNERALETESSQAVAEP 95

Query: 457 TNVLD 443
            N L+
Sbjct: 96  INELE 100


>SB_43261| Best HMM Match : TSP_1 (HMM E-Value=0.0026)
          Length = 649

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 604 ICRRSSSSGSEHHFX-KVATSLASCDAXAGVPSLYSAASSNXTCAIXMAPLG 756
           +C ++   G +  +  ++AT  ASC        L  AA +   CA+ +A LG
Sbjct: 450 LCTKTCGGGEKQKYESELATDDASCSDGTRKSVLKKAACNTDPCAVAVAELG 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,074,991
Number of Sequences: 59808
Number of extensions: 366656
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)