Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B16
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1, ...    86   3e-17
At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1, ...    83   2e-16
At2g36430.1 68415.m04472 expressed protein contains Pfam profile...    29   5.5  

>At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 46/109 (42%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
 Frame = -3

Query: 836 YXFAXLTGTWTS-CWCSAT*GTELQSILPRGAXXMAQVXFDEAAEYSDGTPAXASQLAKD 660
           Y FA LTG        S   G       P GA  M ++  DEA EY DGTPA  +Q+ KD
Sbjct: 192 YVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEAVEYEDGTPATEAQMGKD 251

Query: 659 VATXLKWCSEPELDDRRQMTIKAIGMFSMLAAVV*YYKRHKWSTLKFRK 513
           V + L W +EPE+++R+ M  K I + S+      YY+R KWS LK RK
Sbjct: 252 VVSFLSWAAEPEMEERKLMGFKWIFLLSLALLQAAYYRRLKWSVLKSRK 300


>At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 44/109 (40%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
 Frame = -3

Query: 836 YXFAXLTGTWTS-CWCSAT*GTELQSILPRGAXXMAQVXFDEAAEYSDGTPAXASQLAKD 660
           Y FA LTG        S   G       P GA  M ++  DEA EY DG PA  +Q+ KD
Sbjct: 192 YVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEAVEYEDGVPATEAQMGKD 251

Query: 659 VATXLKWCSEPELDDRRQMTIKAIGMFSMLAAVV*YYKRHKWSTLKFRK 513
           + + L W +EPE+++R+ M  K I + S+      YY+R KWS LK RK
Sbjct: 252 IVSFLAWAAEPEMEERKLMGFKWIFLLSLALLQAAYYRRLKWSVLKSRK 300


>At2g36430.1 68415.m04472 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 448

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 694 PSLYSAASSNXTCAIXMAPLGSMDCN 771
           P L S+A+   TC+I   P   +DCN
Sbjct: 33  PRLLSSAAGKPTCSIFRVPQSMIDCN 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,176
Number of Sequences: 28952
Number of extensions: 244383
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)