Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B14
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   4e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          122   5e-28
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   2e-20
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              91   8e-19
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     52   8e-07
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    37   0.019
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.025
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.033
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              34   0.13 
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  34   0.13 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.40 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.53 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.6  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.8  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (310), Expect = 4e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +1

Query: 316 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 495
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  122 bits (293), Expect = 5e-28
 Identities = 50/110 (45%), Positives = 78/110 (70%)
 Frame = +1

Query: 256 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 435
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 436 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 585
           ++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAM 275



 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +3

Query: 606 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 728
           VK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 282 VKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 172 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 318
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 91.5 bits (217), Expect = 8e-19
 Identities = 39/66 (59%), Positives = 51/66 (77%)
 Frame = +1

Query: 388 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 567
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 568 TREHAL 585
           TREHA+
Sbjct: 61  TREHAI 66


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 29/110 (26%), Positives = 52/110 (47%)
 Frame = +1

Query: 205 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 384
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 385 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 534
           ++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 66  SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
 Frame = +1

Query: 172 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 345
           M K+    N+ VI HVD GKST T  L+ K G I   K    +F    ++          
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71

Query: 346 VLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 522
               L  E        I   K    + + + +ID+PGH DF   +       D A+++V 
Sbjct: 72  TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131

Query: 523 AGTG 534
             +G
Sbjct: 132 CVSG 135


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
 Frame = +1

Query: 187 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 354
           T I + V+G+V+SGKST  G L Y     G  +  +  F    E Q     S  +  +  
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170

Query: 355 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 528
               E         A    E S   +T ID  GH  ++K  I G +    D A+L++A  
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230

Query: 529 TG 534
            G
Sbjct: 231 AG 232


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +1

Query: 196  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 375
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 376  RGITI 390
            RGIT+
Sbjct: 1987 RGITV 1991


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
 Frame = +1

Query: 169 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 342
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87

Query: 343 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 522
            + + L   R  G   D+           +T++D PGH   IK +I G      A +I  
Sbjct: 88  -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGE 128

Query: 523 AGTGEFEAGISKNGQTR 573
            GT   E G  ++G+ +
Sbjct: 129 CGT--IEGGFGQSGKVK 143


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
 Frame = +1

Query: 193 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 345
           + + V+G+VD+GKST     T G L    G   +R    K E E+     +G     +  
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289

Query: 346 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 486
               +    + G  +D A    E+SK  +T ID  GH  ++K  I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 430 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 534
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 379 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 525
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 355 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 522
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 436 IIDAPGHRDFIKNMITGTSQADCAVLIV 519
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 381 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 241
           TT+T S     YPS+   +  +F        D T  N TT V  +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 642  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 782
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,570,393
Number of Sequences: 59808
Number of extensions: 585786
Number of successful extensions: 1674
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)