Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B13
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...   135   7e-33
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    29   0.88 
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.5  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   3.6  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   6.2  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   8.2  

>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  135 bits (327), Expect = 7e-33
 Identities = 57/130 (43%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
 Frame = +1

Query: 79  CLPCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPS 258
           C   K GF I  +RDD ++TYWQSDG  PH ++I+F K+  + ++ +Y  Y LDESYTPS
Sbjct: 34  CSSEKSGFPIRLVRDDNIDTYWQSDGSQPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPS 93

Query: 259 RISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDI-HDRPIRTYMIQIAVLSNHQNGRDT 435
            + I AGT F DL+ +  +++ EP+GW  +P+ D   +  +  ++IQI +L+NHQ+G+D+
Sbjct: 94  TLRISAGTGFQDLEIVTTVQVEEPTGWVHVPVGDFGRNGLLDVHLIQIKILANHQSGKDS 153

Query: 436 HMRQIKVHSP 465
           H+R IK+++P
Sbjct: 154 HVRLIKIYAP 163


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 193 KTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSG 336
           K  ++HI  Y DY +   +   + S+R   HF+  Q+  +I L E +G
Sbjct: 274 KEKLTHIIKYDDYLVHLVHETLQYSVRLEQHFHYTQDPLIIFLFEQNG 321


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 289 NDLQEIEVIELIEPSGWEMIPIKDIHD 369
           +D +EI+  E+ E S WEMI  +D  D
Sbjct: 692 DDFEEIDTDEIEEQSDWEMISNQDASD 718


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 433 THMRQIKVHSPCEPTSFD--INKFRNFSTVQFQQYATIR*YNLLLPVER 573
           T  + + V  P EP S +  +N F  FST +   +A  + Y+LLL  E+
Sbjct: 424 TPRQLLNVKRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQ 472


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 625 NFMTKSFVSIFVIYLFSYEQLLFRNNCYKE 714
           +F  K+ +  F I    Y++ LF  NCYK+
Sbjct: 14  DFTLKNLI-FFAISTLCYKRALFNENCYKK 42


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 376 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINK 495
           I T +I  AVLS+H       + + KV   C+P S  + K
Sbjct: 260 IETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,382
Number of Sequences: 5004
Number of extensions: 65034
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)