Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B13
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350...   153   1e-37
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094...    29   5.0  

>05_07_0246 +
           28634530-28634735,28634841-28634901,28634996-28635088,
           28635326-28635391,28635506-28635576,28636225-28636329,
           28637065-28637134
          Length = 223

 Score =  153 bits (372), Expect = 1e-37
 Identities = 82/176 (46%), Positives = 111/176 (63%), Gaps = 24/176 (13%)
 Frame = +1

Query: 88  CKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRIS 267
           CKPG G+  LRDD ++TYWQSDG  PHLVNIQFQKK  +  + +Y D+KLDESYTPS+IS
Sbjct: 50  CKPGNGVASLRDDNLDTYWQSDGAQPHLVNIQFQKKVQLQLVVVYVDFKLDESYTPSKIS 109

Query: 268 IRAGTHFNDLQ----------------------EIEVIELIEPSGWEMIPIK--DIHDRP 375
           +RAG  F++L+                      EI+ +EL +P GW  I +   D  +  
Sbjct: 110 VRAGDGFHNLKEYIDIRLGRTGKLWQDFVSVNMEIKTVELSKPVGWVHISLSGADPRETF 169

Query: 376 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINKFRNFSTVQFQQYATIR 543
           I T+M+QI+VLSNH NGRDTH+RQIK++ P  P       F +F++ +F  Y+T+R
Sbjct: 170 IHTFMLQISVLSNHLNGRDTHIRQIKIYGP-RPNHVPHQPF-HFTSREFVTYSTVR 223


>06_02_0068 + 11107493-11107653,11109116-11109218,11109311-11109423,
            11109502-11109624,11110165-11110266,11110367-11110532,
            11111215-11111331,11111438-11111478,11111735-11111836,
            11111924-11112140,11112271-11112498,11112580-11112707,
            11112804-11112921,11113020-11113235,11113314-11113463,
            11113553-11113629,11113973-11114190,11114443-11114656,
            11114744-11114823,11114898-11115015,11115092-11115262,
            11116124-11116292,11116404-11116447,11116620-11116662,
            11116743-11116888,11118337-11118431,11118579-11119477,
            11120540-11120638,11120907-11121002,11123447-11123568,
            11123675-11123767,11123922-11124114
          Length = 1653

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/91 (20%), Positives = 38/91 (41%)
 Frame = +1

Query: 280  THFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVH 459
            +HF    ++E   +IEP    +IP      +  R  ++  A L N      +   + + +
Sbjct: 901  SHFQ-AWKLESASIIEPPCNFIIPFHSQGKKRPRWALVDKAHLHNTWRSSQSSYHRYRTN 959

Query: 460  SPCEPTSFDINKFRNFSTVQFQQYATIR*YN 552
            +   P+S  +N   +   +    Y T+R Y+
Sbjct: 960  ADVSPSSLMVNLMNDLLDLSLHNYETVRSYS 990


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,352,689
Number of Sequences: 37544
Number of extensions: 340988
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)