Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B13
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.)              173   2e-43
SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)                 38   0.008
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.011
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              28   8.7  

>SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score =  173 bits (421), Expect = 2e-43
 Identities = 79/139 (56%), Positives = 106/139 (76%), Gaps = 1/139 (0%)
 Frame = +1

Query: 130 METYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIE 309
           +ETYWQSDG  PHL+NIQF++KT +  I IY DYK DESYTPS+IS+RAG  F+DL +IE
Sbjct: 89  LETYWQSDGPQPHLINIQFKRKTAIQKISIYADYKADESYTPSKISVRAGNSFHDLHQIE 148

Query: 310 VIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP-CEPTSFD 486
           +I+L EP+GW  + + +  DRPIRTYM+Q+AVL+NHQNGRDTHMRQIK+ +P C+  + D
Sbjct: 149 LIQLDEPTGWLTVSLNE-GDRPIRTYMLQVAVLANHQNGRDTHMRQIKIFAPLCDAVNPD 207

Query: 487 INKFRNFSTVQFQQYATIR 543
           +     F++V    Y+ +R
Sbjct: 208 M---PTFTSVDCAMYSCVR 223


>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
 Frame = +1

Query: 109 DQLRDDCMETYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGT- 282
           D L D    TYW+SDG Q  H V +  +   ++  +YI  D + D++Y P RI I  G  
Sbjct: 175 DCLTDGDPVTYWESDGNQGRHWVRLSIKPGVIIKRLYIELDAR-DDNYMPYRIIISGGEV 233

Query: 283 -HFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVH 459
            HF  L E+ V   +  +G  ++    + +     ++I+I +     +G DT +  IK+ 
Sbjct: 234 GHFKQLNEVFVD--LTVTGDVLV----LEEMTQYFHIIEIKIKECKDDGIDTRIHGIKIV 287

Query: 460 S 462
           S
Sbjct: 288 S 288


>SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)
          Length = 717

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
 Frame = +1

Query: 136 TYWQSDGQL-PHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAG---THFNDLQE 303
           +YWQSDG    H V ++ +   ++  + I      D+SY P  + + AG   TH  ++ +
Sbjct: 107 SYWQSDGPARSHWVRLRMRPNVVLKLLSINVA-SADQSYMPQHVVVMAGRDETHLREIAD 165

Query: 304 IEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIK 453
           + +   +          K+       + + QI +   H +G DT +R +K
Sbjct: 166 VRIPRYLHNFTQSYPTHKEF---TFNSRLFQINIKRCHSDGCDTRIRGLK 212


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +1

Query: 124  DCMETYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQ 300
            D  E+YWQS G Q  H + ++     ++  + +  D   D SY PS + I  G   + L+
Sbjct: 1280 DGTESYWQSSGPQGKHWIRLELFPDLLIHRLCMTVD-PSDSSYMPSLVVISGGDTVSRLK 1338

Query: 301  EIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTS 480
            +I+ + +   S   ++ +  + + P     I+I++     +G D  +  + + +  +   
Sbjct: 1339 DIKTVHI--GSSDSLVTL--LEEAPEEYRYIEISIRQCKSSGIDCKVHGLTISARPKADE 1394

Query: 481  FDINKFRNFSTVQFQQYAT 537
             D+    +F  +   Q AT
Sbjct: 1395 DDVAASFSFLALDDDQDAT 1413


>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +1

Query: 151 DGQLPHLVNI-----QFQKKTMVSHIYIYTDYKL 237
           D  LPH V++     QF KKT +S +Y Y  Y+L
Sbjct: 263 DLDLPHNVDVETCGAQFNKKTKMSDLYFYLTYEL 296


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 241  HLIYSQCKCKYVIPLFFSETVC*PSVEVVHQTASMFPCSHLSI 113
            H++ S C C+YV+    S ++C      VH   S+ PC ++ +
Sbjct: 937  HVVMSLCSCRYVV---MSMSLC----RYVHVVMSLCPCRYVHV 972


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,203,028
Number of Sequences: 59808
Number of extensions: 432086
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)