Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B13
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical ...   140   1e-33
Z73972-5|CAA98261.2|  201|Caenorhabditis elegans Hypothetical pr...    91   7e-19
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical
           protein Y48G1C.12 protein.
          Length = 210

 Score =  140 bits (339), Expect = 1e-33
 Identities = 59/126 (46%), Positives = 84/126 (66%)
 Frame = +1

Query: 88  CKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRIS 267
           CK GFGID+L  D +E YWQSDG  PH + ++FQKKT V+ +  Y D+K DESYTPS+I 
Sbjct: 38  CKSGFGIDELLSDSVEKYWQSDGPQPHTILLEFQKKTDVAMMMFYLDFKNDESYTPSKIQ 97

Query: 268 IRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQ 447
           ++ G+   D+   +     EP GW  I ++D + +P R + +Q+ V+ NHQNGRDTH+R 
Sbjct: 98  VKMGSSHQDIFFRQTQTFNEPQGWTFIDLRDKNGKPNRVFWLQVQVIQNHQNGRDTHIRH 157

Query: 448 IKVHSP 465
           ++V  P
Sbjct: 158 VRVLGP 163


>Z73972-5|CAA98261.2|  201|Caenorhabditis elegans Hypothetical
           protein F15H10.3 protein.
          Length = 201

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 41/121 (33%), Positives = 63/121 (52%)
 Frame = +1

Query: 103 GIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGT 282
           G+D+L  +  E  W+++   PH     F KKT +S++ ++ DY  DESY P  + I  G 
Sbjct: 41  GVDELLHESSELAWRTNMSPPHRALFTFSKKTDISYVMLFLDYSRDESYCPQEVRIDLGD 100

Query: 283 HFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHS 462
             ND        + +P GW  IPI D    P+R   +Q+ ++ NH+ GRD  +R  +V  
Sbjct: 101 GTNDWWLKMYRRVDQPKGWVKIPIHDAFGNPLRVMSLQMTIMKNHEKGRDCVVRHFRVLG 160

Query: 463 P 465
           P
Sbjct: 161 P 161


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 204 YHCFFLKLYVNQVWKLSIRLPVCFHAVISQLINTKSWFTRK 82
           Y+  F   Y   +W    +  VC + V+++ ++T+S+F  K
Sbjct: 345 YYLIFKFGYSTSMWLYKSKRQVCLYTVLNKKLSTESFFFEK 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,026
Number of Sequences: 27780
Number of extensions: 357326
Number of successful extensions: 865
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)