Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B13
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 103 GIDQLRDDCMETYWQS-DGQLPHLVNIQFQKKTMVSHIYIYTD 228
           G  ++ ++ +E  W          +N++ +KK  +SH ++YT+
Sbjct: 425 GFSKIAENLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYTN 467


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 643 FVSIFVIYLFSYEQLLFRNNCYKENSN 723
           F++I V Y F+Y     R N Y  NSN
Sbjct: 435 FLAINVFYWFAYLSRSERINYYNVNSN 461


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 88  CKPGFGIDQLRDDCME 135
           CKPG+  D  + +C E
Sbjct: 249 CKPGYQADVEKQECTE 264


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 268 LIFCLVYSFHLIYSQ 224
           + FC V+ FHL++++
Sbjct: 209 MTFCRVFPFHLMFNR 223


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 268 LIFCLVYSFHLIYSQ 224
           + FC V+ FHL++++
Sbjct: 209 MTFCRVFPFHLMFNR 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,362
Number of Sequences: 438
Number of extensions: 4213
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)