Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B12
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 30 0.52
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 30 0.52
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 29 1.2
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 28 1.6
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 28 1.6
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 28 2.1
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.8
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc... 27 2.8
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 27 3.7
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 3.7
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 27 4.9
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 6.4
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 8.5
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 26 8.5
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/53 (26%), Positives = 31/53 (58%)
Frame = +1
Query: 580 DKKEKLYKGKNENSQIDISPKSNQEKIELEIKVESPKDEEEAVEYIEDISDDE 738
DK++ K + +N I+ N+ ++E+E + E+ DE+EA++Y ++ +
Sbjct: 40 DKEKSSKKVQKKNKVIE---SLNEMEVEMEDENENENDEQEAIQYYINVESQD 89
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 29.9 bits (64), Expect = 0.52
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 616 NSQ-IDISPKSNQEKIELEIKVESPKDEEEAVEYIEDISDDEKLSVIVNTIKKRDTP 783
NS+ I + P+ N + + VES +DE E + ++SD E +S + N K D P
Sbjct: 372 NSETITVDPEGNWKLNTFDEPVESSEDEFVPKEKVIELSDGEGISTMAN--KSNDQP 426
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 634 SPKSNQEKIELEIK--VESPKDEEEAVEYIEDISDDEKLSV 750
S N+E E E+ EEE V+ +E+I+D+EK SV
Sbjct: 222 SKDENEENKETSTTNVAETDAPEEETVDTVEEIADEEKHSV 262
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 215 PETYLQTVDIMKPNIQYNKIDIPIHLFDYLNSDNCNLDKICLSCLSI--NSQLMYPLSLD 388
P Y QT I+ PNI + ++ + + S +L CL+ +S+ N PL++D
Sbjct: 69 PSVYFQT-KIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVD 127
Query: 389 KDENLLSNAYTAVTAI 436
+ L + TA ++
Sbjct: 128 AAKLLRTGDKTAYNSL 143
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 75 SYCYLYTY*KISFVICMQWVFSHIYNFKLLVCLHTINFTIWTLKVFLLRLIC 230
SY L Y F++ M ++ H++N +L+ I FT + +R+IC
Sbjct: 105 SYSILVNY---GFILNMVHMYVHVFNILILLLAPVIIFTAEMSMMIQVRIIC 153
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 655 KIELEIKVESPKDEEEAVEYIEDISDDEKLSVIVNTIKK 771
+++ I PK+ E EYI++ S D L +N +K+
Sbjct: 190 RLQEYISFSHPKEREVDEEYIQNFSSDPSLKSSLNDLKR 228
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 311 DNCNLDKICLSCLSINSQLM-YPLSLDKDENLLSNAYTAVTAIKPHYELPSXSVRCMPNI 487
+NC L K+ LS SIN ++M + ++++ +N N T + +L S V +
Sbjct: 805 ENCKLGKLNLSETSINERVMGFSTNINETDNYDDNETTQSDTATSYEQLASVCVNELSGK 864
Query: 488 NTTIL*F 508
N F
Sbjct: 865 NVLFFYF 871
>SPBC1703.08c |||5-formyltetrahydrofolate
cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 480 GMQRTLXEGNS*CGLIAVTAV*AFDNKFSSLSNDNGY 370
G R + + + C LI V V AFD K S L + GY
Sbjct: 109 GESRKIMDDETDCELIIVPGV-AFDEKLSRLGHGKGY 144
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 589 EKLYKGKNENSQIDISPKSNQEKIELEIKVESPKDEEEAVEYIEDISDDE 738
EK N + + PK+ E ELE+ K E+E E D DD+
Sbjct: 253 EKSITASNGTCTVKMKPKAVSETDELELADLMKKFEKENAEISGDEEDDQ 302
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 598 YKGKNENSQIDISPKSNQEKIELEIKVESPKDE 696
++ KN+ S I +S K E E E+K ++P +E
Sbjct: 1630 FRSKNDLSSIKLSTKEGLENEENELKDKAPPNE 1662
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 589 EKLYKGKNENSQIDISPKSNQEKIELEIKVESPKDEE--EAVEYIEDISDDEKLSVIVNT 762
E + K K S+I+I+ + + +L++ + D ++ IED DD +
Sbjct: 57 EAVPKMKTNASKIEINKEGSNSNTKLDVTNSTTSDSPSIKSSVQIEDTEDDMFADSPSPS 116
Query: 763 IKKRDTPESVTVINES 810
+K+++T + ++ + S
Sbjct: 117 VKRQNTGKGISTLTRS 132
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 676 VESPKDEEEAVEYIEDISDDEKL-SVIVNTIKKRDTPESVTVINES 810
++S DEEE + ++ SD+E+ + VN KK+ + E T N +
Sbjct: 224 IQSGNDEEEIFSWGDERSDEEESDNEQVNDEKKQSSEEDTTENNSA 269
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 592 KLYKGKNENS-QIDISPKSNQEKIELEIKVESPKDEEEAVEYI 717
K G ++N + D KS+ +K++ K E +EEE EY+
Sbjct: 40 KADSGSSDNEVESDHESKSSSKKLKENAKEEEGGEEEEEDEYV 82
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/43 (25%), Positives = 27/43 (62%)
Frame = +1
Query: 652 EKIELEIKVESPKDEEEAVEYIEDISDDEKLSVIVNTIKKRDT 780
E+ E EIK SP++ ++A+E + + + ++K + ++++ T
Sbjct: 31 EETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEKKT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,700
Number of Sequences: 5004
Number of extensions: 63330
Number of successful extensions: 248
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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