Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B11
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 337 1e-93
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.17
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 28 2.1
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 28 2.1
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 6.3
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 26 6.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 6.3
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 8.4
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 8.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.4
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 337 bits (828), Expect = 1e-93
Identities = 152/237 (64%), Positives = 191/237 (80%)
Frame = +1
Query: 190 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 369
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 370 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 549
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 550 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 729
MFGYATDET E +PLT++LAHKLN ++ RR+G W RPD+KTQVT EY GA +P
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184
Query: 730 QRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINPCGLFIIGG 900
+RV T+VVS QH++ I+ E LR EI EK+IK +PA LDE+TV HI P G F++GG
Sbjct: 185 RRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVYHIQPSGRFVVGG 241
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.17
Identities = 40/144 (27%), Positives = 65/144 (45%)
Frame = -2
Query: 605 STTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 426
S++ + SVSS + +P TSSS+L S + + SS+S TL S L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235
Query: 425 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLI 246
SS P + S +T S + S S+ ++S ++ +S S +S I+S
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292
Query: 245 WSHILSG*PSPTDSDVNKNTDPSS 174
S S P+ T S ++ ++ SS
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315
Score = 29.5 bits (63), Expect = 0.68
Identities = 28/131 (21%), Positives = 61/131 (46%)
Frame = -2
Query: 851 SSRYWAGITSLMTFSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTYSQVTCVFES 672
SS + I S + S +S +S S S +++ ++ + + +++ + + S
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS 292
Query: 671 GLAHQNSPFRLSSAIF*LSLCASTTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPA 492
+ +SP SS I +S++ + S++SS + + +S +PTSSS S + +
Sbjct: 293 SSSSSSSPTSTSSTIS----SSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSS 348
Query: 491 AMFGDCWSSAS 459
+ +SS +
Sbjct: 349 SPSSSSFSSTT 359
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 2.1
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +1
Query: 94 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 270
W + K M S T S+D E S+F S+SV E CD+ SD L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692
Query: 271 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 369
K E L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 744 SMNSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 622
S +SL D TT ++IF+ NL +W P +I P+ N L
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 240 RPNKRRYSRRAPESGSGRKSCM 305
+P KR+Y+R+AP S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -2
Query: 683 VFESGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 564
+F G A++ N+PF +S +++ S +T ++G+H V ++
Sbjct: 184 LFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTI 225
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 226 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 330
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 462 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 337
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 358 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 477
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 8.4
Identities = 31/125 (24%), Positives = 50/125 (40%)
Frame = -2
Query: 827 TSLMTFSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTYSQVTCVFESGLAHQNSP 648
TS T +S + I S T T ++ P NT +Q+T + ++P
Sbjct: 327 TSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQIT---SPTAVNSSTP 383
Query: 647 FRLSSAIF*LSLCASTTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWS 468
SS + + S+++ + ++S ++ S TSSS L S TP S
Sbjct: 384 ITSSSVLNSSTPITSSSILNTSTPITS---SSVLNSSTPITSSSILNSSTPITSSTVLNS 440
Query: 467 SASIT 453
S IT
Sbjct: 441 STPIT 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,934,761
Number of Sequences: 5004
Number of extensions: 87462
Number of successful extensions: 266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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