Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B10
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0392 - 13432385-13432622,13432734-13433104 32 0.70
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 30 2.8
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 30 2.8
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 29 3.8
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 29 3.8
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 6.6
07_01_0313 + 2216498-2216953 29 6.6
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426... 29 6.6
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 28 8.7
>05_03_0392 - 13432385-13432622,13432734-13433104
Length = 202
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 564 RTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGMEYTPGFGAKQLAWMAHTGIM 725
R P+ R+ ++V G ++G G V G EY G + W H ++
Sbjct: 5 RNPSRHRRPRRSDLRDVVVDRGEVVGGGGKVEGREYVGGLAGHLVVWAPHIALL 58
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -2
Query: 808 PPTTPAVYQAARIRL----GHPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPL 656
PP T + A +RL G + A+T+ + + A+ +CL PNP +IP+
Sbjct: 806 PPLTVKLLHARLLRLDLLAGLSSLLLRALTSSALHLHALRVHCLLPNPSHLTIPI 860
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 164 LIMLSRMCIGRSAFNVTQTLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRERLMA 343
L+ L ++ I SA+ V P+P NF+ R +VR P R + RS T A
Sbjct: 40 LLFLPKIDIPFSAYLVLHKSGIPLPPNFLHRRDLVRARGILPVRRSSARSSTTALTCPAA 99
Query: 344 PAGPNA 361
PN+
Sbjct: 100 AGDPNS 105
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 826 TAIVLRPPTTPAVYQAARIRLGHPRKQIGAMTAPIIPVCAI 704
TA LRPP P +AA G P++ +G T + PV A+
Sbjct: 200 TARRLRPPAPPPRRRAASSSQGQPKRWVGC-TLVVCPVVAV 239
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 29.5 bits (63), Expect = 3.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 749 LPWVAQSDACSLVHCWCSW 805
+PW+ +DA S HC C W
Sbjct: 402 VPWLVLTDAISYGHCQCQW 420
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 325 SGETHGTCWTKCIQLGQGCISWSLCSWTSCSV 420
SG+ HG W + + G + +S + SCS+
Sbjct: 58 SGQGHGNSWIEVLSTGSSVVDFSSSAAESCSI 89
>07_01_0313 + 2216498-2216953
Length = 151
Score = 28.7 bits (61), Expect = 6.6
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -2
Query: 745 IGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIRPNVTIMDIHPFLA--TKFRSA 572
+ A+T P IP A+ L P P + ++P TMP P V + + P A T +
Sbjct: 58 VPAVTLPPIP--AVPKVTLPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPAVPTVPPNT 115
Query: 571 GVLKTAT--ALPAVSTKEPAMYPYV 503
V+ A ALP V+ A P V
Sbjct: 116 VVVPAAVVPALPKVALPPMAAVPNV 140
>01_01_0574 +
4263247-4263615,4263945-4263992,4264308-4264514,
4264670-4264826,4264958-4265041,4265785-4265909,
4268100-4268218,4268535-4268619,4269087-4269134
Length = 413
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 263 VVRNYAREPRTRVATRSQPTLRERLMA 343
V+RNY P R+ T++Q RER+++
Sbjct: 110 VLRNYVPSPSQRIRTQNQREYRERILS 136
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -2
Query: 808 PPTTPAVYQAARIRLGHPRKQIGAMTAPIIPVCAIHA---NCLAPNPGVYSIPLTTMPEP 638
PPT P V PR + + P+ P A+++ + P+P + S+ L ++P+P
Sbjct: 363 PPTHPEVNGFDEF---DPRGSVPDTSPPVNPSQAVNSLEMDLFGPDP-INSLALVSVPQP 418
Query: 637 IIRPNV 620
PNV
Sbjct: 419 TASPNV 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,509,263
Number of Sequences: 37544
Number of extensions: 591051
Number of successful extensions: 1850
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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