Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B10
(890 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021) 55 7e-08
SB_28272| Best HMM Match : EGF (HMM E-Value=2.6e-15) 32 0.54
SB_37171| Best HMM Match : EGF (HMM E-Value=2.6e-15) 32 0.54
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 31 0.95
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 31 0.95
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 30 2.9
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 29 6.7
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7) 28 8.8
>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
Length = 344
Score = 55.2 bits (127), Expect = 7e-08
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Frame = +3
Query: 462 SHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARN------GWMSIIVT 623
S +WPQ V++RI TY Y AGSL +TAG+A ++ R+ A+ ++ + W+ I+
Sbjct: 145 SVMWPQVVRDRIHATYAYFAGSLAVTAGAAYSISRSRAVYTMMRASPLLLTAHWVGTILA 204
Query: 624 LGLMIGSGMVVRGMEYTPG 680
+++G +VVR T G
Sbjct: 205 PIMLLGGPLVVRAAVVTAG 223
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +3
Query: 723 MGAVIAPICFLGWPNLMRAAWYTAGVVGGLSTIAVCAPSGE 845
+G ++API LG P ++RAA TAGVVG LS A CAP G+
Sbjct: 199 VGTILAPIMLLGGPLVVRAAVVTAGVVGALSLTAACAPDGK 239
>SB_28272| Best HMM Match : EGF (HMM E-Value=2.6e-15)
Length = 157
Score = 32.3 bits (70), Expect = 0.54
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = -1
Query: 824 CNCTQTPNYTSSVPSCTHQIGPPKEANWSNDSSHNTSVRHPC*LFSPKSRCVLHSSYYHA 645
CNCT+ + + TH+ PKE+ S+ + N++ PC S C +++ +
Sbjct: 41 CNCTEEYICRVNFENNTHRCECPKES--SSGTCANSARVKPC----DSSPCQNNATCTNK 94
Query: 644 RTNHQTQCD-NNGHPSISC-YQI*KCG---CSENSNCTTSSQH 531
N C + G C Q+ CG C NS CT ++
Sbjct: 95 EDNSGYNCTCSTGFTGSDCETQVKPCGSSPCKNNSTCTNKDEN 137
>SB_37171| Best HMM Match : EGF (HMM E-Value=2.6e-15)
Length = 186
Score = 32.3 bits (70), Expect = 0.54
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = -1
Query: 824 CNCTQTPNYTSSVPSCTHQIGPPKEANWSNDSSHNTSVRHPC*LFSPKSRCVLHSSYYHA 645
CNCT+ + + TH+ PKE+ S+ + N++ PC S C +++ +
Sbjct: 41 CNCTEEYICRVNFENNTHRCECPKES--SSGTCANSARVKPC----DSSPCQNNATCTNK 94
Query: 644 RTNHQTQCD-NNGHPSISC-YQI*KCG---CSENSNCTTSSQH 531
N C + G C Q+ CG C NS CT ++
Sbjct: 95 EDNSGYNCTCSTGFTGSDCETQVKPCGSSPCKNNSTCTNKDEN 137
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 31.5 bits (68), Expect = 0.95
Identities = 24/97 (24%), Positives = 37/97 (38%)
Frame = -1
Query: 887 TAPRPIARXHACSRLSRWCTHCNCTQTPNYTSSVPSCTHQIGPPKEANWSNDSSHNTSVR 708
+AP P R H + + + T YT S P T + P A + + ++ S
Sbjct: 371 SAPSPTHRVHTRLHTNLHAQYTHAEYTHAYTPSTPKATRLVHPHLHAKYIH--AYTPSTP 428
Query: 707 HPC*LFSPKSRCVLHSSYYHARTNHQTQCDNNGHPSI 597
P P+ LH+ Y HA T + HP +
Sbjct: 429 TPTRPVPPR----LHTEYIHAYTPSTPTPTHRVHPRL 461
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 31.5 bits (68), Expect = 0.95
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -1
Query: 785 PSCTHQIGPPKEANWSNDSSHNTSVRHPC*LFSPKSRCVLHSSYYHARTNHQTQCDN 615
P HQ PP + SH+T V HP + P+ V H S Y +H Q D+
Sbjct: 1570 PIVFHQ--PPPAVHQPVLHSHDTFVVHPSAAYEPRGSTVSHESNYIGIPSHVEQYDD 1624
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +1
Query: 151 YVFRINYVITNVYRSLGVQCNADSKIASTTKFCTEKLCGQKLCTRTSNKGRYTLTTHTSG 330
YV + I+ V + Q NA+ ++A C++K+ C++T + + L HT
Sbjct: 51 YVREVEMDISYVVDDIQKQANAEQQMADDVTACSKKIYQCDQCSKTFTR-PHDLRRHTKS 109
Query: 331 ETHGTCWTKCIQLGQ 375
+G KC G+
Sbjct: 110 IHNGEKPYKCEHCGR 124
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 170 MLSRMCIGRSAFN-VTQTLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRE 331
M S C+G S + VT+T+ P P + + + N +AT + P L+E
Sbjct: 574 MASPQCLGYSHYRTVTKTICLPSPDDIINQTLTAVNQIHAKAVYIATDNNPMLQE 628
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +2
Query: 599 WMDVHYCHIGSDDWFWHGSKRNGVHTWIWG*TISMDGAHWYYGSCHCSNLLPWVAQSDAC 778
W D C D + HG+ G ++ WG SMD + C C+ ++ +QS
Sbjct: 140 WNDQVVCSFVHDTF--HGNGMEGERSFTWGSRASMDDRRF---RCPCAVMVVGPSQSGKT 194
Query: 779 SLVH 790
+ VH
Sbjct: 195 TWVH 198
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 764 QSDACSLVHCWCSWGSEYNCSVCTIWRVLNMRAP 865
Q+D +L++ W YN + C + RV N R P
Sbjct: 1433 QADLNNLINWASDWQMSYNVTKCHLLRVTNKRKP 1466
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 764 QSDACSLVHCWCSWGSEYNCSVCTIWRVLNMRAP 865
Q+D +L++ W YN + C + RV N R P
Sbjct: 1026 QADLNNLINWASDWQMSYNVTKCHLLRVTNKRKP 1059
>SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 208 CNADSKIASTTKFCTEKLCGQKLCT 282
C+ DS AS C E CG++ CT
Sbjct: 81 CSVDSDCASKDDMCCEGDCGERKCT 105
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = -2
Query: 820 IVLRPPTTPAVYQAARIRLGHPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPE 641
I + PP PA++ P IG +T P P+ + P + ++P ++P
Sbjct: 367 IPIPPPAMPAMFNPHV-----PPPMIGPVTVPPPPLIPPPQASIPPPTMIQTLPPPSVPP 421
Query: 640 PII----RPNVTIMDIHPFLATKFRSAGVL 563
P I RP+V + +PF + + G +
Sbjct: 422 PPIGVPNRPSVLYPNNNPFQRSGYNGPGFM 451
>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
Length = 167
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Frame = +1
Query: 346 CWTKC-IQLGQGC--ISWSLCS---WTSCSVLLW 429
CWTKC I G C + + C+ WT C+++ W
Sbjct: 98 CWTKCAIVHGTKCAIVHGTKCAIVCWTKCAIVCW 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,839,851
Number of Sequences: 59808
Number of extensions: 712198
Number of successful extensions: 2169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2143
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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