Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B10
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17410.1 68417.m02607 expressed protein                             24   3.6  
At2g40860.1 68415.m05044 protein kinase family protein / protein...    28   7.2  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    28   9.6  
At2g43740.1 68415.m05437 hypothetical protein weak similarity to...    28   9.6  

>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 23.8 bits (49), Expect(2) = 3.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 887 TAPRPIARXHACSRLSRWCTHCNCTQTPNY 798
           T P P    H C+    +  HC+    PN+
Sbjct: 113 TTPPPGYVCHRCNVSGHFIQHCSTNGNPNF 142



 Score = 23.8 bits (49), Expect(2) = 3.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 809 TPNYTSSVPSCTHQIGPPKEANWSNDSSHNTSVRHPC*LFSPKSRCVL 666
           TPN + S+PS    +  P E  +  +    TS       F P+ +C L
Sbjct: 161 TPNGSYSLPSGAVAVLKPNEDAFEKEMEGLTSTTRSVGEFPPELKCPL 208


>At2g40860.1 68415.m05044 protein kinase family protein / protein
           phosphatase 2C ( PP2C) family protein contains Pfam
           PF00481: Protein phosphatase 2C domain; contains Pfam
           PF00069: Protein kinase domain; similar to partner of
           PIX 1 (GI:21702695) [Homo sapiens]
          Length = 658

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 535 STKEPAMYPYVVFIRSFTYCGQR*DSLKSTWF 440
           ST EP+ Y  V+   SF  CG+R +S++ T F
Sbjct: 380 STDEPSRYVPVISCGSFATCGRR-ESMEDTHF 410


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 249 YRETMWSEIMHENLEQGSL--HAHNPHFGRDSW 341
           Y +T    +++E ++ GSL  H HNP F   SW
Sbjct: 518 YEDTEERILVYEYMKNGSLADHLHNPQFDPLSW 550


>At2g43740.1 68415.m05437 hypothetical protein weak similarity to
           RTM1 (GI:6503088) [Arabidopsis thaliana]
          Length = 309

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 676 GVYSIPLTTMPEPIIRPNVTIMDIHPFLATKFRSAGVLKT 557
           G+Y  P+T + +  +R N  + D +   +T ++S+G L T
Sbjct: 185 GIYVCPITRINDVALRTNYKVTDDYDDQSTFYQSSGPLTT 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,377,405
Number of Sequences: 28952
Number of extensions: 465965
Number of successful extensions: 1352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)