Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B08
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    37   0.003
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    35   0.013
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    35   0.013
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    31   0.29 
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    29   1.2  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    28   2.0  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    28   2.0  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.7  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   6.1  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   8.1  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
 Frame = +1

Query: 391 FQWLLLLSCGAVYAVCALSTTTLSFVLPATK--NDFELSSSDKGRLTATPLIGMCVGSYF 564
           F+  L  +C   Y     S  +  F +PA      F +S +         L+G C G   
Sbjct: 131 FKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVFLLGYCSGPII 190

Query: 565 WGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 702
           W  L++  GRK                 +V +     + CRFF+GF
Sbjct: 191 WAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQTIMMCRFFAGF 236


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
 Frame = +1

Query: 391 FQWLLLLSCGAVYAVCALSTTTLS--FVLPATK--NDFELSSSDKGRLTATPLIGMCVGS 558
           F+  L ++C  VY+  AL +T  S  F +PA      F +S +         L G   G 
Sbjct: 130 FRKKLKITC--VYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGP 187

Query: 559 YFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 702
             W  L++  GRK                 +V +     + CRFFSGF
Sbjct: 188 IVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGF 235


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +1

Query: 535 LIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFG 705
           ++G C+G   W  +++  GRK                 +  Q     + CRFF G+G
Sbjct: 184 MLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGYG 240


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 3/133 (2%)
 Frame = +1

Query: 364 ALHHAGYGCFQWLLLLSCGAVYA---VCALSTTTLSFVLPATKNDFELSSSDKGRLTATP 534
           A++  G+G +QW L    G  +    +  + T+ +   L         +      LT + 
Sbjct: 68  AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127

Query: 535 LIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIG 714
            +G+ VG+  W   AD  GR+                +    +F+          FG+  
Sbjct: 128 NLGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICVFDALWSFGV-- 185

Query: 715 ATGPHLPXXSVTF 753
             G +LP  S  F
Sbjct: 186 --GGNLPVDSAIF 196


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = +1

Query: 541 GMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 702
           G   G   W  +++  GRK                 +V +     + CRFFSGF
Sbjct: 145 GFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMICRFFSGF 198


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +1

Query: 397 WLLLLSCGAVYAVCALSTTTLS---FVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFW 567
           W+L  + G    +    T  +S    V+  +    EL++  K  +T+   +G  +G    
Sbjct: 88  WVLAFAAGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIA 147

Query: 568 GNLADARGRK 597
           G LAD  GRK
Sbjct: 148 GALADFFGRK 157


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 382 YGCFQW--LLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATPLIGMCVG 555
           YG +++   +  + G +  +  + T  L + LPA +  F  ++     L+A P IG  + 
Sbjct: 103 YGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLV 162

Query: 556 SYFWGNLA 579
              WG  +
Sbjct: 163 HLLWGGFS 170


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 661 SFSGFLACRFFSGFGIIG 714
           S SGF+A RFF+G  I G
Sbjct: 255 SASGFIALRFFNGLAIAG 272


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 696 GEEPASQEPREGLHNAGQERGQSIQK*SSNDGDLSASSVRQVT 568
           G +P+S +  E   N   ER +S      N G +S++S +  T
Sbjct: 538 GTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFT 580


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 627 CSGRVPVQRCAVLLWVPGLQVLLRVRNHRSH 719
           C+    +  C +LLW   LQ  L  R+ R H
Sbjct: 348 CTYMAAMPACVILLWFEPLQCWLYKRDKRKH 378


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 417 AGQQQQPLEASV 382
           AGQQQQPL+AS+
Sbjct: 624 AGQQQQPLQASI 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,669
Number of Sequences: 5004
Number of extensions: 62515
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)