Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B08
(878 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5) 43 4e-04
SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012) 39 0.006
SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05) 37 0.025
SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25) 33 0.40
SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33) 32 0.53
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 31 1.6
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 30 2.8
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_23868| Best HMM Match : Gal_Lectin (HMM E-Value=1.4e-05) 29 6.6
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 29 6.6
SB_4525| Best HMM Match : Sugar_tr (HMM E-Value=0.028) 29 6.6
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_36671| Best HMM Match : IBB (HMM E-Value=2.8) 28 8.7
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04) 28 8.7
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0) 28 8.7
SB_7082| Best HMM Match : FGF (HMM E-Value=2.8e-22) 28 8.7
>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
Length = 563
Score = 42.7 bits (96), Expect = 4e-04
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1
Query: 307 LMEEHGESKDRVQRAPFETALHHAGYGCFQWLLLLSCGAVYAVCALSTTTLSFVLPATKN 486
++ E E +D+ E A+ GYG FQ LLL G + ++ T L+ + PA +
Sbjct: 36 ILVEDQEKEDKELTYTVEDAIDRLGYGLFQIKLLLMIGFAWMADSMEITILAIMCPAIRC 95
Query: 487 DFELSSSDKGRLTATPLIGMC 549
++ LS+ + +T L+ C
Sbjct: 96 EWNLSTWAEALITTVTLLMRC 116
>SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012)
Length = 466
Score = 38.7 bits (86), Expect = 0.006
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +1
Query: 520 LTATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSG 699
L + IGM GS+ G ++DA GRK S++V S F RF G
Sbjct: 113 LQSVYFIGMLFGSFLTGMVSDAWGRKNCLFLFTGIMLAAGVASALVDCVSFFAFLRFLVG 172
Query: 700 FGIIGA 717
FG+ GA
Sbjct: 173 FGLSGA 178
>SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)
Length = 457
Score = 36.7 bits (81), Expect = 0.025
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +1
Query: 400 LLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATP----LIGMCVGSYFW 567
+L++ GA +A + T + AT N ++L D+G L AT +GM +GS
Sbjct: 38 VLVMPMGAQFAALIFAMGTPHYHC-ATPN-WKLIC-DRGYLGATLQSCFFVGMLIGSLVC 94
Query: 568 GNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIG 714
G ++DA GRK S+ V S F RF GFG+ G
Sbjct: 95 GVISDAWGRKKCLFISYTLLGVAGVGSACVDCVSFFAFLRFVVGFGLTG 143
>SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)
Length = 1271
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -1
Query: 695 EKNLQARNPEKDCTTLDRNAARASKSRAPMMAIFRPRASAKLPQKYEP 552
E+ LQARN E L RNA++ KSR+ + RP KLPQ P
Sbjct: 1093 EQELQARNAEA-AEKLPRNASQHDKSRSSNSVVGRP-LRTKLPQTAVP 1138
>SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)
Length = 708
Score = 32.3 bits (70), Expect = 0.53
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = -3
Query: 831 PGNSIVPHGPKTPRACTASRLCASTTESHRXXGKMRXRGSDDSEPGEEPASQEPREGLHN 652
P NS+ G TP + + S S + +++ RGS DSE ++ + +G+
Sbjct: 466 PANSVATQGASTPVLSVGTNIRESPQASRKFPDQVKRRGSVDSE--KDVLTVVLVKGM-- 521
Query: 651 AGQERGQSI-QK*SSNDGDLSASSVRQVTPEVRADAHSDERRGGEAALVGGRQL 493
AG+ G +I S GDL ++ V P A A RRG E V G +
Sbjct: 522 AGKGLGFTIVGGRGSPRGDLPI-YIKNVLPGGAAAADGRLRRGYEVLSVNGTDM 574
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -1
Query: 644 RNAARASKSRAPMMAIFRPRASAKLPQKYEPTHIPMSGVAVRRPLSEDDSSKSFLVAGST 465
+NAA++ S A+ P +S +L P+H SG + P S+D+SS ++
Sbjct: 427 QNAAKSYTSSMHTNAVLSPTSSEELRSTASPSH--QSGSSSPTPTSQDESSDKKILQAKA 484
Query: 464 K 462
K
Sbjct: 485 K 485
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/64 (34%), Positives = 24/64 (37%)
Frame = +1
Query: 520 LTATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSG 699
L A GM +GS GNL+D GRK SS V S F RF G
Sbjct: 104 LQACDFSGMVLGSLISGNLSDRLGRKKWCLYSAIILLISSTSSSFVDCPSFFAFLRFVVG 163
Query: 700 FGII 711
I
Sbjct: 164 MSTI 167
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/96 (20%), Positives = 37/96 (38%)
Frame = -3
Query: 804 PKTPRACTASRLCASTTESHRXXGKMRXRGSDDSEPGEEPASQEPREGLHNAGQERGQSI 625
P+ PR + ++ G RGS + ++P+SQE G + +
Sbjct: 346 PRPPRTGSGNKSLRRPVRVRGGSGGKGGRGSRNRSTSDQPSSQENTSGYRQKKESISEGS 405
Query: 624 QK*SSNDGDLSASSVRQVTPEVRADAHSDERRGGEA 517
+K D D + S+ + E A ++ GE+
Sbjct: 406 EK-YEKDSDSCSESISRSQSESSLKASGNDSSLGES 440
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 807 GPKTPRACTASRLCASTTESHRXXGKMRXRGSDDSEPGE-EPASQEPREGLHNAGQERGQ 631
GP TP C+ S + +T E R + S+ G+ EPA P EG +A Q++
Sbjct: 1028 GP-TPPPCSTSPVGGATQEEEDDDEDDPEREGERSDSGQDEPAPSGPGEGA-SAEQQQQP 1085
Query: 630 SIQK*SSNDGDLSASS 583
Q+ +N D + SS
Sbjct: 1086 PSQQPPANGNDPNQSS 1101
>SB_23868| Best HMM Match : Gal_Lectin (HMM E-Value=1.4e-05)
Length = 318
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 55 APRDRTHVQSRRDIHSSINAVKISFASQIKVLISYILSINTNGIKRTDKQSVSRP 219
A +D TH +SR+D+ + + ++ ++K L + T G+ T + +++ P
Sbjct: 166 AKKDETHTESRQDMGLQLRVLVVTHTVRVKTLQEVAM---TQGLTTTPEATITPP 217
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 560 YEPTHIPMSGVAVRRPLSEDDSSKSFLVAGSTK 462
Y+P + P SG R + EDD+S++ L + K
Sbjct: 728 YQPNNEPFSGEIFSRYICEDDTSRTLLESSKRK 760
>SB_4525| Best HMM Match : Sugar_tr (HMM E-Value=0.028)
Length = 630
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 436 CALSTTTLSFVLPATKNDFELSS-SDKG----RLTATPLIGMCVGSYFWGNLADARGRK 597
C + T+ FV P T + E + D+G L A GM +GS G +ADA GRK
Sbjct: 270 CCDNCTSYEFVGPFTTSVSEWNLICDRGYIGASLQAVFFAGMMIGSVISGMMADAWGRK 328
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 712 GATGPHLPXXSVTFCR*GTET*CCAGSRCFGTVGNYTIA 828
G TG + C G T GS C TVG+YT A
Sbjct: 710 GYTGDGEACTDIDECTDGVHTCALNGSTCTNTVGSYTCA 748
>SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)
Length = 1080
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +1
Query: 73 HVQSRRDIHS--SINAVKISFASQIKVLISYILSINTNGIKRTDKQSVSRPLREILSLCD 246
H++ R H S N +I F+SQI ++ + + + RT V+R LR + CD
Sbjct: 212 HLEDRITFHQQPSKNKPEIIFSSQISLIDALNAAAQSKSDSRTYLIDVARYLRSEIKKCD 271
Query: 247 -ISCKLQFVN 273
IS K VN
Sbjct: 272 GISFKPLNVN 281
>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
Length = 544
Score = 28.3 bits (60), Expect = 8.7
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Frame = +1
Query: 436 CALSTTTLSFVLPATK--NDFELSSSDKGRLTATPLI---GMCVGSYFWGNLADARGRKX 600
C++ + F P T +++L AT I G G+ +G L+D GR+
Sbjct: 63 CSIPRSEWEFTTPYTSIVTEWDLVCEYSSLSWATNSIMFTGWLFGNIVFGILSDKYGRRK 122
Query: 601 XXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGA 717
SS V + + RFF GFG+ G+
Sbjct: 123 VLFISSCMVCWVAFASSFVPYYWLYAVFRFFIGFGLGGS 161
>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 651
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +1
Query: 667 SGFLACRFFSGFGIIGATGPHLPXXSVTFCR*GTET*CCAGSRCFGTVGNYTIARGSRFL 846
+G C GF ++ + + C +T G RC G Y S F+
Sbjct: 161 NGSFVCSCREGFRLLS---DNTTCRDIDECEELKKTSLSCGQRCLNFPGGYNCTCNSGFI 217
Query: 847 IIPDXR 864
+IPD R
Sbjct: 218 LIPDNR 223
>SB_7082| Best HMM Match : FGF (HMM E-Value=2.8e-22)
Length = 260
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 551 THIPMSGVAVRRPLSEDDSSKSF 483
T PMSGV+ R SED+SS SF
Sbjct: 183 TPSPMSGVSQRSSQSEDESSGSF 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,035,029
Number of Sequences: 59808
Number of extensions: 528727
Number of successful extensions: 1467
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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