Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B08
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical pr...    53   3e-07
Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical p...    53   3e-07
AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical...    33   0.27 
Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia t...    31   1.4  
AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    31   1.4  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z81094-3|CAB03151.1|  477|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z68335-2|CAA92731.1|  390|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U40802-6|AAV28320.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 35/129 (27%), Positives = 53/129 (41%)
 Frame = +1

Query: 328 SKDRVQRAPFETALHHAGYGCFQWLLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSS 507
           S D  +    + A+   G+G FQ  L +  G  +   A+    LS + PA   ++ +SS 
Sbjct: 60  SPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSV 119

Query: 508 DKGRLTATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACR 687
            +  +T     GM + S FWG + D  GR+                S +   F   L  R
Sbjct: 120 QQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFR 179

Query: 688 FFSGFGIIG 714
             +GFGI G
Sbjct: 180 GLTGFGIGG 188


>Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 35/129 (27%), Positives = 53/129 (41%)
 Frame = +1

Query: 328 SKDRVQRAPFETALHHAGYGCFQWLLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSS 507
           S D  +    + A+   G+G FQ  L +  G  +   A+    LS + PA   ++ +SS 
Sbjct: 60  SPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSV 119

Query: 508 DKGRLTATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACR 687
            +  +T     GM + S FWG + D  GR+                S +   F   L  R
Sbjct: 120 QQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFR 179

Query: 688 FFSGFGIIG 714
             +GFGI G
Sbjct: 180 GLTGFGIGG 188


>AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical
           protein Y66D12A.13 protein.
          Length = 533

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +1

Query: 523 TATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 702
           T + +IG+ +GS   G L+D  GRK                SS   S   F+  RFF G 
Sbjct: 118 TTSQMIGIMLGSAIAGQLSDLYGRKKITLLFLCMMLFFSTSSSFSSSIEVFIIVRFFIGI 177

Query: 703 GIIGAT 720
              G T
Sbjct: 178 CCGGLT 183


>Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical
           protein C36A4.5 protein.
          Length = 954

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -1

Query: 848 IKKRDPLAIV*FPTVPKHLEPAQHHVSVPQRQKVTEXXGR*GPVAPMIPNPEKNLQARNP 669
           +K +D L  +  P VP+   P     S   R   T    R  P  P +  P + L +R P
Sbjct: 299 VKSKDALLDIPAPAVPR---PVAGKPST--RSASTTGAARTRPAIPAVSAP-RALTSRAP 352

Query: 668 EKD-CTTLDRNAARASKSRAPMMAIFRPRASA 576
               C T  R+AA A+++  P  A   P+A++
Sbjct: 353 TGPACPTTTRSAAPATRTAVPPRATAPPKAAS 384


>AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia
           telangectasia mutated)family protein 1 protein.
          Length = 649

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 247 YHTKIVFLVTAAIHSVCLSALSHLY*LTECKILKL*FDSRTIF*RHLSRSECRVSTER 74
           ++ KI+  V   +HSVC+  LS L    E +  ++   + T F + +  S CR S  R
Sbjct: 3   HYKKIIHQVLLKLHSVCIGQLSKLEEYRETRTYRMKQQAVTAFEQQIQNS-CRTSLAR 59


>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = -1

Query: 701 NPEKNLQARNPEKDCTTLDRNAARASKSRAPMMAIFRPRASAKLPQKYEPTHIPMSGVAV 522
           +PE    + N       +D++   A +     M+    RA  +LP  YE +H P      
Sbjct: 102 SPEAARSSSNSSDRNPRMDQDFELAMELACEEMSAIHARA--QLPMNYEASHPP------ 153

Query: 521 RRPLSEDDSSKSFLVAGSTKLSVVVLSA 438
            +P SE D  KS   AGS  ++   + A
Sbjct: 154 EQPSSESDEDKSVSSAGSGSITTAAVLA 181


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/90 (25%), Positives = 39/90 (43%)
 Frame = -1

Query: 773  VSVPQRQKVTEXXGR*GPVAPMIPNPEKNLQARNPEKDCTTLDRNAARASKSRAPMMAIF 594
            V+VP+ +K T    +  PV P  P+P+K +    P K  T  D       K       + 
Sbjct: 810  VNVPEPEKKTPVLAKKTPVKPRDPSPKKAV----PAKPSTKTDAPPVSVKKPE----PVS 861

Query: 593  RPRASAKLPQKYEPTHIPMSGVAVRRPLSE 504
            +P+  +  P+K EP    +    V+ P+ +
Sbjct: 862  KPKEPS--PKKAEPNSPVVPPTPVKNPVKK 889


>Z81094-3|CAB03151.1|  477|Caenorhabditis elegans Hypothetical
           protein F58G11.4 protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 603 GDLSASSVRQVTPEVRADAHSDERRGGEAALVGGRQLEVILGGG 472
           G L   +   +   + A + SD+R    +  +GGR L +ILG G
Sbjct: 117 GGLGMGNTSTLRTTLTAHSMSDDRAKAMSVFIGGRALGLILGPG 160


>Z68335-2|CAA92731.1|  390|Caenorhabditis elegans Hypothetical
           protein C29F4.3 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 803 PKHLEPAQHHVSVPQRQKVTEXXGR*GPVAPMIPN 699
           P H +P  H+ S+P  Q VT    R   + PMIP+
Sbjct: 341 PSH-QPVNHNFSIPHFQHVTIPRFRVPVIPPMIPH 374


>U40802-6|AAV28320.1|  330|Caenorhabditis elegans Hypothetical
           protein ZC477.3a protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = -1

Query: 719 VAPMIPNPEKNLQ-ARNPEKDCTTLDRNAARASKSRAPMMAIFRPRASAKLPQKYEPTHI 543
           V P    PE +++   + +K  TT+    AR SK    +  + +  A+       +PT +
Sbjct: 224 VKPTDALPESDVKKVSDLDKLLTTIREENARLSKEMRELSRLAQLEAALDA----DPTSV 279

Query: 542 PMSGVAVRRPLSEDDSSKSFLVAGSTKLSVVVLSAQTAYTAP 417
              G  + R L + + +    +   T L+VVV+    A TAP
Sbjct: 280 VYVGSDMERLLEQTEKNIESKMKLRTLLTVVVIYTAVAVTAP 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,541,667
Number of Sequences: 27780
Number of extensions: 375306
Number of successful extensions: 1054
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)