Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B08
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   4.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.5  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   8.6  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 611 PMMAIFRPRASAKLPQKYEPTHIPMSGVAVRRPL 510
           P  AI R  A    P  ++P       +A R P+
Sbjct: 399 PAFAIHRDSAIYPNPDSFDPERFDQDAMASRHPM 432


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -3

Query: 543 SDERRGG--EAALVGGRQLEVILGGGQHEAERGRAECADGVHGAAGQQQQPLEASVTGVM 370
           SD R  G  E+ ++ G   +++LGG     E+G A C   V+    Q+   LEA +  V 
Sbjct: 40  SDWRVAGRSESVVIPG---DIVLGGLFPVHEKGGASCGPNVYNRGVQR---LEAMLFAVD 93

Query: 369 QRGLEGRPLHSIFALSVLLHECDTD 295
           Q   +   L  I     +L  C  D
Sbjct: 94  QINRDEDILPGITIGVHILDTCGRD 118


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 432 GVHGAAGQQQQPLEASVTGVMQRGLEGRPLHSIFALSVLLHECDTD 295
           G H  AG QQ+P E  VT    +     P      L++L+  C+ D
Sbjct: 289 GYHAIAGGQQRPDENVVTDKKSKVNFALP-ELQHNLNILVDMCEQD 333


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 52  PAPRDRTHVQSRRDIHSSINAVKISFASQIKVLISYI 162
           PAP       +  D  + I AV     + +  LIS+I
Sbjct: 27  PAPEPEAEADAEADPEAGIGAVLKVLTTGLPALISWI 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,094
Number of Sequences: 438
Number of extensions: 4317
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)