Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B06
         (948 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGJ9 Cluster: Ribosomal protein 3; n=1; Lonomia obliq...    63   1e-08
UniRef50_UPI00006CAF49 Cluster: Ribosomal protein S27a containin...    38   0.28 
UniRef50_Q8IM64 Cluster: Ribosomal S27a, putative; n=6; Plasmodi...    34   4.6  
UniRef50_P62979 Cluster: 40S ribosomal protein S27a; n=188; root...    34   4.6  

>UniRef50_Q5MGJ9 Cluster: Ribosomal protein 3; n=1; Lonomia
           obliqua|Rep: Ribosomal protein 3 - Lonomia obliqua
           (Moth)
          Length = 42

 Score = 62.9 bits (146), Expect = 1e-08
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +2

Query: 143 MAVXEDRHYCGKCHSTMVFKDDDK*ISPL*PVRNARDCCV 262
           MAV EDRHYCGKCHSTMVFKDDD  +SPL  ++++R  C+
Sbjct: 1   MAVMEDRHYCGKCHSTMVFKDDDNRLSPL-SLKDSRPLCM 39


>UniRef50_UPI00006CAF49 Cluster: Ribosomal protein S27a containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ribosomal protein S27a containing protein - Tetrahymena
           thermophila SB210
          Length = 189

 Score = 38.3 bits (85), Expect = 0.28
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 131 PELFMAVXEDRHYCGKCHSTM 193
           P +FMA   DRHYCGKCH T+
Sbjct: 121 PGIFMAKHYDRHYCGKCHLTL 141


>UniRef50_Q8IM64 Cluster: Ribosomal S27a, putative; n=6;
           Plasmodium|Rep: Ribosomal S27a, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 149

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 107 RAQAXSAAPELFMAVXEDRHYCGKCHSTMVFK 202
           + Q  + AP   MA   DR YCG+CH T++ K
Sbjct: 118 KRQCDNCAPGTLMASHFDRDYCGRCHLTIMKK 149


>UniRef50_P62979 Cluster: 40S ribosomal protein S27a; n=188;
           root|Rep: 40S ribosomal protein S27a - Homo sapiens
           (Human)
          Length = 80

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA   DRHYCGKC  T  F K +DK
Sbjct: 54  VFMASHFDRHYCGKCCLTYCFNKPEDK 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 376,699,638
Number of Sequences: 1657284
Number of extensions: 3306041
Number of successful extensions: 4268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4267
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87365783978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)