Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B06
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    32   0.10 
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    32   0.10 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   6.7  

>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 107 RAQAXSAAPELFMAVXEDRHYCGKCHSTM 193
           R +  +     FMA  +DR YCG+CH T+
Sbjct: 118 RRECPNCGASTFMANHKDRLYCGRCHLTL 146


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 107 RAQAXSAAPELFMAVXEDRHYCGKCHSTM 193
           R +  +     FMA  +DR YCG+CH T+
Sbjct: 118 RRECPNCGASTFMANHKDRLYCGRCHLTL 146


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 271 NPSYTAVASVPYRLEGTYLFVVVFEDHR 188
           NP+YT      Y L  TYL    F++HR
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHR 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,473
Number of Sequences: 5004
Number of extensions: 13324
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)