Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B06
         (948 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X63237-1|CAA44911.1|  156|Homo sapiens ubiquitin protein.              34   0.66 
S79522-1|AAB21188.1|  156|Homo sapiens ubiquitin carboxyl extens...    34   0.66 
M10939-1|AAA36788.1|  152|Homo sapiens protein ( Human ubiquitin...    34   0.66 
BC066293-1|AAH66293.1|  156|Homo sapiens ribosomal protein S27a ...    34   0.66 
BC053371-1|AAH53371.1|  156|Homo sapiens ribosomal protein S27a ...    34   0.66 
BC001392-1|AAH01392.1|  156|Homo sapiens ribosomal protein S27a ...    34   0.66 
AB061854-1|BAB79488.1|  121|Homo sapiens ribosomal protein S27A ...    34   0.66 

>X63237-1|CAA44911.1|  156|Homo sapiens ubiquitin protein.
          Length = 156

 Score = 34.3 bits (75), Expect = 0.66
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA   DRHYCGKC  T  F K +DK
Sbjct: 130 VFMASHFDRHYCGKCCLTYCFNKPEDK 156


>S79522-1|AAB21188.1|  156|Homo sapiens ubiquitin carboxyl extension
           protein protein.
          Length = 156

 Score = 34.3 bits (75), Expect = 0.66
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA   DRHYCGKC  T  F K +DK
Sbjct: 130 VFMASHFDRHYCGKCCLTYCFNKPEDK 156


>M10939-1|AAA36788.1|  152|Homo sapiens protein ( Human ubiquitin
           mRNA, 3' end. ).
          Length = 152

 Score = 34.3 bits (75), Expect = 0.66
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA   DRHYCGKC  T  F K +DK
Sbjct: 126 VFMASHFDRHYCGKCCLTYCFNKPEDK 152


>BC066293-1|AAH66293.1|  156|Homo sapiens ribosomal protein S27a
           protein.
          Length = 156

 Score = 34.3 bits (75), Expect = 0.66
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA   DRHYCGKC  T  F K +DK
Sbjct: 130 VFMASHFDRHYCGKCCLTYCFNKPEDK 156


>BC053371-1|AAH53371.1|  156|Homo sapiens ribosomal protein S27a
           protein.
          Length = 156

 Score = 34.3 bits (75), Expect = 0.66
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA   DRHYCGKC  T  F K +DK
Sbjct: 130 VFMASHFDRHYCGKCCLTYCFNKPEDK 156


>BC001392-1|AAH01392.1|  156|Homo sapiens ribosomal protein S27a
           protein.
          Length = 156

 Score = 34.3 bits (75), Expect = 0.66
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA   DRHYCGKC  T  F K +DK
Sbjct: 130 VFMASHFDRHYCGKCCLTYCFNKPEDK 156


>AB061854-1|BAB79488.1|  121|Homo sapiens ribosomal protein S27A
           protein.
          Length = 121

 Score = 34.3 bits (75), Expect = 0.66
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA   DRHYCGKC  T  F K +DK
Sbjct: 95  VFMASHFDRHYCGKCCLTYCFNKPEDK 121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,410,931
Number of Sequences: 237096
Number of extensions: 578537
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)