Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B06
         (948 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16530-1|AAA28161.1|  163|Caenorhabditis elegans ubiquitin-like:...    37   0.024
AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-lik...    37   0.024

>L16530-1|AAA28161.1|  163|Caenorhabditis elegans
           ubiquitin-like:ribosomal proteinfusion protein protein.
          Length = 163

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 QAXSAAPELFMAVXEDRHYCGKCHSTMV 196
           Q  S    +FMA   +RHYCG+CH T+V
Sbjct: 116 QQPSCGGGVFMAQHANRHYCGRCHDTLV 143


>AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-like
           family protein 1,isoform a protein.
          Length = 163

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 QAXSAAPELFMAVXEDRHYCGKCHSTMV 196
           Q  S    +FMA   +RHYCG+CH T+V
Sbjct: 116 QQPSCGGGVFMAQHANRHYCGRCHDTLV 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,801,005
Number of Sequences: 27780
Number of extensions: 84334
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)