Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B06
         (948 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23410.1 68414.m02932 ubiquitin extension protein, putative /...    42   6e-04
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ...    33   0.21 
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ...    33   0.21 

>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
           40S ribosomal protein S27A (RPS27aA) strong similarity
           to ubiquitin extension protein (UBQ5) GB:AAA32906
           GI:166934 from (Arabidopsis thaliana)
          Length = 156

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +2

Query: 122 SAAPELFMAVXEDRHYCGKCHSTMVFKDDDK 214
           S  P  FMA   DRHYCGKC +T VFK  D+
Sbjct: 125 SCGPGTFMASHFDRHYCGKCGTTYVFKKADE 155


>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
           ribosomal protein S27A (RPS27aC) identical to GI:166933,
           GI:166934
          Length = 157

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 140 FMAVXEDRHYCGKCHSTMVFKDD 208
           FMA   DRHYCGKC  T V++ +
Sbjct: 131 FMASHFDRHYCGKCGLTYVYQKE 153


>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
           ribosomal protein S27A (RPS27aB) identical to GI:166936
          Length = 157

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 140 FMAVXEDRHYCGKCHSTMVFKDD 208
           FMA   DRHYCGKC  T V++ +
Sbjct: 131 FMASHFDRHYCGKCGLTYVYQKE 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,347,721
Number of Sequences: 28952
Number of extensions: 82168
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)