Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B05
(998 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.027
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.11
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.34
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 1.9
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 7.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 9.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.027
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = -1
Query: 671 PPPPXXXXXXXAPXXXXXXXXXGXPPPPPPXXGXGXXFPXGGGXKXXYXPPXXPXPPPPP 492
PPPP P PPPPPP P PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS-------NAAGSIPLPPQGRSAPPPPP 365
Query: 491 PK 486
P+
Sbjct: 366 PR 367
Score = 33.5 bits (73), Expect = 0.048
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -1
Query: 599 PPPPPPXXGXGXXFPXGGGXKXXYXPPXXPXPPPPP 492
PPPPPP P G G PP PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPP----PPPPP 343
Score = 30.7 bits (66), Expect = 0.34
Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Frame = -1
Query: 740 PPXXVGGGXXXPPPXXXGXGXXXPPPPXXXXXXXAPXXXXXXXXXGXPPPPPP--XXGXG 567
PP PP PPPP A PPPPPP G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 566 XXFPXGGGXKXXYXPPXXPXPPPPPP 489
P + P P PPP P
Sbjct: 374 RQPPPLSSSRAVSNP---PAPPPAIP 396
Score = 30.3 bits (65), Expect = 0.44
Identities = 25/87 (28%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Frame = -1
Query: 740 PPXXVGGGXXXPPPXXXGXGXXXPPPPXXXXXXXA--PXXXXXXXXXGXPPPPPPXXG-X 570
PP G PP G PPPP P P PPP G
Sbjct: 342 PPRSNAAGSIPLPPQ--GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 569 GXXFPXGGGXKXXYXPPXXPXPPPPPP 489
P G PP P PP PP
Sbjct: 400 APALPPLGNASRTSTPP-VPTPPSLPP 425
Score = 27.5 bits (58), Expect = 3.1
Identities = 21/90 (23%), Positives = 23/90 (25%), Gaps = 2/90 (2%)
Frame = +2
Query: 719 PPPXXXGGXPPXXXXVXXXXGGXPXXSPPQKXXXPPPXXXKKKXXXP--PPPSXKKXKXP 892
PP G P P S P PPP + P PPP+ P
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Query: 893 LXXXXXXXXXXXXXKXXXPPPLXXXXPPPL 982
PP L PP L
Sbjct: 402 ALPPLGNASRTSTPPVPTPPSLPPSAPPSL 431
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/68 (22%), Positives = 18/68 (26%)
Frame = +2
Query: 683 PXPXXRGGXKXXPPPXXXGGXPPXXXXVXXXXGGXPXXSPPQKXXXPPPXXXKKKXXXPP 862
P P G PP P P PP KK PP
Sbjct: 255 PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP 314
Query: 863 PPSXKKXK 886
PP ++ +
Sbjct: 315 PPPSRRNR 322
Score = 25.8 bits (54), Expect = 9.5
Identities = 22/94 (23%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Frame = -1
Query: 764 PXXVGGXXPPXXVGG-GXXXPPPXXXGXGXXXPPPPXXXXXXXAPXXXXXXXXXGXPPPP 588
P + PP V PPP PP AP PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPL 292
Query: 587 PPXXGXGXXFPXGGGXKXXYXPPXXPXPPPPPPK 486
PP K P PPPPP +
Sbjct: 293 PPPSSRVSAAALAANKKR-------PPPPPPPSR 319
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.11
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 605 GXPPPPPPXXGXGXXFPXGGGXKXXYXPPXXPXPPPPPPKXXKK 474
G PPPPPP G + PP P PPPPP K+
Sbjct: 7 GNPPPPPPPPG--------------FEPPSQPPPPPPPGYVKKR 36
Score = 28.3 bits (60), Expect = 1.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 524 PPXXPXPPPPPP 489
PP P PPPPPP
Sbjct: 5 PPGNPPPPPPPP 16
Score = 24.2 bits (50), Expect(2) = 2.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 392 PPXLXPPPXPPP 427
PP PPP PPP
Sbjct: 5 PPGNPPPPPPPP 16
Score = 21.4 bits (43), Expect(2) = 2.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 542 PPPPXGNXPP 571
PPPP G PP
Sbjct: 12 PPPPPGFEPP 21
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.34
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 740 PPXXVGGGXXXPPPXXXGXGXXXPPPP 660
PP + GG PPP G PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 30.3 bits (65), Expect = 0.44
Identities = 21/61 (34%), Positives = 21/61 (34%)
Frame = -1
Query: 671 PPPPXXXXXXXAPXXXXXXXXXGXPPPPPPXXGXGXXFPXGGGXKXXYXPPXXPXPPPPP 492
PPPP AP PPP P G P G PP PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPV-------PPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPP 782
Query: 491 P 489
P
Sbjct: 783 P 783
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 599 PPPPPPXXGXGXXFPXGGGXKXXYXPPXXPXPPPPPP 489
PPPPPP P P PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 707 PPPXXXGXGXXXPPPPXXXXXXXAPXXXXXXXXXGXPPPPPPXXGXG 567
PPP G PPPP P PPPPPP G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP----------PPPPPPAVSAG 788
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = -1
Query: 764 PXXVGGXXPPXXVGGGX-XXPPPXXXGXGXXXPPPP 660
P + P +GG PPP G G PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 681 PPPPXXGGGXXXSPPHXXXGXXPPXXP 761
PP P GG PP G PP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 1.0
Identities = 21/77 (27%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Frame = -1
Query: 722 GGXXXPPPXXXGXGXXXPPPP-XXXXXXXAPXXXXXXXXXGXPPPPPPXXGXGXXFPXGG 546
G PPP G PPPP P PPPP G P
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP--- 260
Query: 545 GXKXXYXPPXXPXPPPP 495
+ P PPPP
Sbjct: 261 -PPPMHHEPGEHMPPPP 276
Score = 29.1 bits (62), Expect = 1.0
Identities = 21/77 (27%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Frame = -1
Query: 722 GGXXXPPPXXXGXGXXXPPPP-XXXXXXXAPXXXXXXXXXGXPPPPPPXXGXGXXFPXGG 546
G PPP G PPPP P PPPP G P
Sbjct: 269 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP--- 325
Query: 545 GXKXXYXPPXXPXPPPP 495
+ P PPPP
Sbjct: 326 -PPPMHHEPGEHMPPPP 341
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.4 bits (48), Expect(2) = 1.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 512 PXPPPPPP 489
P PPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 23.0 bits (47), Expect(2) = 1.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 605 GXPPPPPP 582
G PPPPPP
Sbjct: 304 GLPPPPPP 311
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 492 GGGGGGGXXGGXIXXFXPPPXGEXXPPPXLGGGG 593
G GGG G GG + F P G P GG G
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 524 PPXXPXPPPPPPKXXKK 474
P P PPPPPP +K
Sbjct: 1091 PSAVPPPPPPPPAEVEK 1107
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 671 PPPPXXXXXXXAPXXXXXXXXXGXPPPPPP 582
PPP AP PPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,617
Number of Sequences: 5004
Number of extensions: 40382
Number of successful extensions: 329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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