Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B05
         (998 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.81 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.81
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 521 PXXPXPPPPPP 489
           P  P PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 522 PXKXXPPPPPP 490
           P K  PPPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 512  PXPPPPPPK 486
            P PPPPPP+
Sbjct: 1857 PEPPPPPPR 1865


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 512  PXPPPPPP 489
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 599  PPPPPPXXGXGXXF 558
            PPPPPP    G  +
Sbjct: 1355 PPPPPPPPSSGQAY 1368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,683
Number of Sequences: 438
Number of extensions: 11841
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33137286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)