Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B03
(908 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26820.1 68416.m03355 esterase/lipase/thioesterase family pro... 33 0.35
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 32 0.46
At5g46190.1 68418.m05681 KH domain-containing protein strong sim... 31 1.1
At4g04960.1 68417.m00721 lectin protein kinase, putative similar... 31 1.4
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 30 2.4
At5g57700.2 68418.m07213 BNR/Asp-box repeat family protein conta... 29 3.2
At5g57700.1 68418.m07212 BNR/Asp-box repeat family protein conta... 29 3.2
At1g15530.1 68414.m01868 receptor lectin kinase, putative simila... 29 5.6
At1g17240.1 68414.m02100 leucine-rich repeat family protein cont... 28 7.4
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase... 28 9.8
At3g50860.1 68416.m05569 clathrin adaptor complex small chain fa... 28 9.8
>At3g26820.1 68416.m03355 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 634
Score = 32.7 bits (71), Expect = 0.35
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 511 KLVWSPDCSFVVLA--YGNGVVGFFDLTASNLFNIPIECSRPEGLECSDNTHAVADVIFM 684
KL W FV +A +G +V F + ++FNI ++ + + + A
Sbjct: 472 KLFWPEQSEFVRVASKFGAKIVPFGVVGEDDIFNIVLDSNDQRNIPILKDLMEKATKDAG 531
Query: 685 PLRVKDTKWNWEVLIVTYDG 744
LR K+TK NWE I G
Sbjct: 532 NLRWKETKANWETKIAIIPG 551
>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 671
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 433 IRTKRSDYATIAARTTVNRDPYSQWRKL-VWSPDCSFVVLAYGNGVVGFFDLTASNLFNI 609
++T+R D A I VN DP S+W K+ + D + A + GF+ L +++ F +
Sbjct: 275 LKTRRRDLADILLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSF-L 333
Query: 610 PIECSRPEGLE 642
P+ P E
Sbjct: 334 PVMALAPREKE 344
>At5g46190.1 68418.m05681 KH domain-containing protein strong
similarity to unknown protein (pir||T04533)
Length = 644
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 457 ATIAARTTVNRDPYSQWRKLVWSPDCSFVVLAYGNGVVGFFDLTASNLFNIPIECSRP 630
AT A T ++RD + + R LV S CS V+ G+ + T +N+ + + S P
Sbjct: 136 ATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDP 193
>At4g04960.1 68417.m00721 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 686
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 173 CRKRINQFSTNYTYIRNGNLNQNIFKN 253
C+K + F Y Y+ NG+L++ IF+N
Sbjct: 411 CKKEVGSFMLVYDYMENGSLDRWIFEN 437
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 433 IRTKRSDYATIAARTTVNRDPYSQWRKL-VWSPDCSFVVLAYGNGVVGFFDLTASNLFNI 609
++T+R D A + VN DP S+W K+ + D + A + G++ L ++ F +
Sbjct: 292 LKTRRRDLADVLLNRGVNLDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYMLQGASSF-L 350
Query: 610 PIECSRP 630
P+ P
Sbjct: 351 PVMALAP 357
>At5g57700.2 68418.m07213 BNR/Asp-box repeat family protein contains
Pfam PF02012: BNR/Asp-box repeat
Length = 347
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 519 LESRLLLCGSSIWEWRSW 572
LE LLCGSS+ W SW
Sbjct: 140 LEDGTLLCGSSVESWNSW 157
>At5g57700.1 68418.m07212 BNR/Asp-box repeat family protein contains
Pfam PF02012: BNR/Asp-box repeat
Length = 352
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 519 LESRLLLCGSSIWEWRSW 572
LE LLCGSS+ W SW
Sbjct: 145 LEDGTLLCGSSVESWNSW 162
>At1g15530.1 68414.m01868 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 656
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 173 CRKRINQFSTNYTYIRNGNLNQNIFKN 253
CR++ N+ Y Y+ NG+LNQ IF N
Sbjct: 424 CRRK-NELMLVYDYMPNGSLNQWIFDN 449
>At1g17240.1 68414.m02100 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 729
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 601 FNIPIECSRPEGLECSDNTHAVADVIFMPLR 693
+N+ I+C EG+ C D++ + VI +P R
Sbjct: 70 WNLSIDCCSWEGITCDDSSDSHVTVISLPSR 100
>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative (DEF) (CLA1) identical
to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
synthase, chloroplast precursor (EC 4.1.3.37)
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
(deficient in photosynthesis) protein [Arabidopsis
thaliana] GI:1399261
Length = 717
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 658 HAVADVIFMPLRVKDTKWNWEVLIVTYDGKLRGYLVSQTEGFKIHHTFKF 807
H + D++ + VK T+ VLI K RGY ++ K H KF
Sbjct: 335 HNIDDLVAILKEVKSTRTTGPVLIHVVTEKGRGYPYAERADDKYHGVVKF 384
>At3g50860.1 68416.m05569 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 166
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 157 KIGLIMSEENKSILHELYVYSEWKPEPEYIQKPDNLLL--PENISSLWKWLKFFGPKKNL 330
K ++M+ + K L + Y Y + + E I+ ++L PEN+S+ + FGP L
Sbjct: 3 KAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSRL 62
Query: 331 I 333
+
Sbjct: 63 V 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,810,473
Number of Sequences: 28952
Number of extensions: 405112
Number of successful extensions: 1052
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -