Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B02
         (889 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   3.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.6  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.8  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = -2

Query: 738 LAVEFVLAYQSHGTLDKFELHPF----YHHVPHISH 643
           +  EF L       + + E  P     Y+H PH+SH
Sbjct: 78  MGAEFPLDIMMRRDMSRLEKSPLLANGYNHSPHLSH 113


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 666 HHVPHISHRSRSFEAS 619
           HH PH++H    + A+
Sbjct: 40  HHSPHLNHAMHPYHAN 55


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 340 RTQMRVRNLNRYLRPMRCSRILTKGEFMIKVVNKH*RKGVVVVVDFLHQWISLTCSLEVD 519
           R + R ++LN     +R S      + + K+      K     +DFL+  +S   +L+VD
Sbjct: 104 RERQRTQSLNEAFASLRKSIPTMPSDKLSKIQTL---KLAARYIDFLYHVLSNENALDVD 160

Query: 520 LV 525
           L+
Sbjct: 161 LI 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,085
Number of Sequences: 336
Number of extensions: 3249
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)