Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B01
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   6.6  
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     28   8.7  

>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 159 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK 278
           KRDAP  DN       S KK    L   +E+  +P +  K
Sbjct: 780 KRDAPLRDNDEQFRTYSRKKQHASLESSIEAPCSPRSASK 819


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 159 KRDAPKEDNSLNTLAESAKKTIEELREKVE 248
           KR APK+ N+ + L    +K  EELR++ +
Sbjct: 62  KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,135
Number of Sequences: 59808
Number of extensions: 234074
Number of successful extensions: 671
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)