Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A24
(928 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 30 0.53
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.70
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 29 0.93
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 3.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 8.7
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 8.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 8.7
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 29.9 bits (64), Expect = 0.53
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +2
Query: 251 SEFNYRKSPCLKGKEKENTSTXEPSKSIPQKKMLALT*QMTTTRRHLDSLTSRASMMKAK 430
S F+Y++SPC K K E T+ S S+ + LA + R DS+ R+S + K
Sbjct: 380 SSFSYKRSPC-KRKLVEATAQPAISTSVAEGASLAQVSKPLPERLQKDSM-RRSSPLNEK 437
Query: 431 TTVKRSWKRK 460
T +K
Sbjct: 438 VTASSERMKK 447
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.5 bits (63), Expect = 0.70
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 307 EHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEK 447
E E+E SEED+ + +++ SE+ +S+ +S E E+D E+
Sbjct: 86 ESSEEEEETESEEDSEVSDESESESESESESEEES-ESEEESDESER 131
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 271 ITMPKGKRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEKL 450
+ +PK K E ++ E S EE+ + S+ S E E++S+E+
Sbjct: 67 VEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEES 126
Query: 451 EE 456
+E
Sbjct: 127 DE 128
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 29.1 bits (62), Expect = 0.93
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 271 ITMPKGK--RKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQE 444
+ P+GK RKGK + EE AG D ++ G S + D+ E DS E
Sbjct: 10 LPQPQGKHQRKGKKQLENKILHSYEEESAGFDSEELEDNDEQGYSFGVNSEDDEEIDSDE 69
Query: 445 KLEEK 459
+E+
Sbjct: 70 AFDEE 74
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 283 KGKRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEKLEEK 459
K +KGK+ S EE + ++N SE D+KSI + KL++K
Sbjct: 527 KKNKKGKHTQIEDPTAASKEELENLVREDENDSEQLDHFDMKSILKAEKFKKNRKLKKK 585
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 289 KRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEK-LEEK 459
++ GK + +EQE +DA D + YS +S+ + + E D + K +EE+
Sbjct: 351 QKPGKSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEE 408
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 367 NDNYSETSGQSD-LKSIHDEGENDSQEKLEEK 459
N N + T SD LK+ +DE EN+ + KL K
Sbjct: 403 NRNINSTKENSDYLKTEYDEMENELKAKLSRK 434
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 328 EYSSEEDAGIDMT---NDNYSETSGQSDLKSIHDEGENDSQEKLEEK 459
E S EED +D N+N +T S+ K + + + EKL++K
Sbjct: 54 EKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQK 100
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 355 IDMTNDNYSETSGQSDLKSIHDEGENDSQEKLEEK 459
ID T ++SE Q + + +E D EK++E+
Sbjct: 166 IDRTKRHFSELFTQKQMLQLQNENFKDDYEKIKEE 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,153
Number of Sequences: 5004
Number of extensions: 27615
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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