Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A24
(928 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC024031-1|AAH24031.1| 344|Homo sapiens tripartite motif-contai... 33 1.5
BC013166-1|AAH13166.1| 344|Homo sapiens tripartite motif-contai... 33 1.5
AJ249128-1|CAB65108.1| 344|Homo sapiens DIPB protein protein. 33 1.5
L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein p... 31 7.9
D86322-1|BAA22590.1| 610|Homo sapiens calmegin protein. 31 7.9
BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair cross-c... 31 7.9
BC034479-1|AAH34479.1| 1061|Homo sapiens PGBD3 protein protein. 31 7.9
BC028357-1|AAH28357.1| 610|Homo sapiens calmegin protein. 31 7.9
AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair cross-c... 31 7.9
AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair cross-c... 31 7.9
>BC024031-1|AAH24031.1| 344|Homo sapiens tripartite
motif-containing 44 protein.
Length = 344
Score = 33.1 bits (72), Expect = 1.5
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 286 GKRKGKYE-HXRTEQEYSSEEDAGIDMTNDNYSETSGQSDL-KSIHDEGENDSQEKLEEK 459
G+ GK E + EQE E +AG + ++ SE+ +S+ + DE + +S+E EE+
Sbjct: 73 GEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEE 132
Query: 460 V 462
+
Sbjct: 133 M 133
>BC013166-1|AAH13166.1| 344|Homo sapiens tripartite
motif-containing 44 protein.
Length = 344
Score = 33.1 bits (72), Expect = 1.5
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 286 GKRKGKYE-HXRTEQEYSSEEDAGIDMTNDNYSETSGQSDL-KSIHDEGENDSQEKLEEK 459
G+ GK E + EQE E +AG + ++ SE+ +S+ + DE + +S+E EE+
Sbjct: 73 GEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEE 132
Query: 460 V 462
+
Sbjct: 133 M 133
>AJ249128-1|CAB65108.1| 344|Homo sapiens DIPB protein protein.
Length = 344
Score = 33.1 bits (72), Expect = 1.5
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 286 GKRKGKYE-HXRTEQEYSSEEDAGIDMTNDNYSETSGQSDL-KSIHDEGENDSQEKLEEK 459
G+ GK E + EQE E +AG + ++ SE+ +S+ + DE + +S+E EE+
Sbjct: 73 GEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEE 132
Query: 460 V 462
+
Sbjct: 133 M 133
>L04791-1|AAA52397.1| 1493|Homo sapiens excision repair protein
protein.
Length = 1493
Score = 30.7 bits (66), Expect = 7.9
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +2
Query: 212 KYLENLVKLCFAFSEFNYRKSPCLKGKEKENTSTXEPSKSIPQKKMLALT*QMTTTRRHL 391
KYL + KL F + K K +K+ P KK L+ + ++H+
Sbjct: 273 KYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPNKKARVLSKKEERLKKHI 332
Query: 392 DSLTSRASMMKAKTTVKRSWKRKCWRS 472
L RA + K + ++ R+ W S
Sbjct: 333 KKLQKRALQFQGKVGLPKA--RRPWES 357
>D86322-1|BAA22590.1| 610|Homo sapiens calmegin protein.
Length = 610
Score = 30.7 bits (66), Expect = 7.9
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +1
Query: 322 EQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEKLEEKVLEIIDG 480
EQE EE A ++ D E Q+D + + E E++ +EK EE++ EII+G
Sbjct: 520 EQE-EKEEKAALEKPMD-LEEEKKQNDGEMLEKEEESEPEEKSEEEI-EIIEG 569
>BC127104-1|AAI27105.1| 1493|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 1493
Score = 30.7 bits (66), Expect = 7.9
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +2
Query: 212 KYLENLVKLCFAFSEFNYRKSPCLKGKEKENTSTXEPSKSIPQKKMLALT*QMTTTRRHL 391
KYL + KL F + K K +K+ P KK L+ + ++H+
Sbjct: 273 KYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPNKKARVLSKKEERLKKHI 332
Query: 392 DSLTSRASMMKAKTTVKRSWKRKCWRS 472
L RA + K + ++ R+ W S
Sbjct: 333 KKLQKRALQFQGKVGLPKA--RRPWES 357
>BC034479-1|AAH34479.1| 1061|Homo sapiens PGBD3 protein protein.
Length = 1061
Score = 30.7 bits (66), Expect = 7.9
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +2
Query: 212 KYLENLVKLCFAFSEFNYRKSPCLKGKEKENTSTXEPSKSIPQKKMLALT*QMTTTRRHL 391
KYL + KL F + K K +K+ P KK L+ + ++H+
Sbjct: 273 KYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPNKKARVLSKKEERLKKHI 332
Query: 392 DSLTSRASMMKAKTTVKRSWKRKCWRS 472
L RA + K + ++ R+ W S
Sbjct: 333 KKLQKRALQFQGKAGLPKA--RRPWES 357
>BC028357-1|AAH28357.1| 610|Homo sapiens calmegin protein.
Length = 610
Score = 30.7 bits (66), Expect = 7.9
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +1
Query: 322 EQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEKLEEKVLEIIDG 480
EQE EE A ++ D E Q+D + + E E++ +EK EE++ EII+G
Sbjct: 520 EQE-EKEEKAALEKPMD-LEEEKKQNDGEMLEKEEESEPEEKSEEEI-EIIEG 569
>AY204752-1|AAO13487.1| 1493|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 1493
Score = 30.7 bits (66), Expect = 7.9
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +2
Query: 212 KYLENLVKLCFAFSEFNYRKSPCLKGKEKENTSTXEPSKSIPQKKMLALT*QMTTTRRHL 391
KYL + KL F + K K +K+ P KK L+ + ++H+
Sbjct: 273 KYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPNKKARVLSKKEERLKKHI 332
Query: 392 DSLTSRASMMKAKTTVKRSWKRKCWRS 472
L RA + K + ++ R+ W S
Sbjct: 333 KKLQKRALQFQGKVGLPKA--RRPWES 357
>AL138760-2|CAH70291.1| 1493|Homo sapiens excision repair
cross-complementing rodent repairnt regulator of
chromatin, sub protein.
Length = 1493
Score = 30.7 bits (66), Expect = 7.9
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +2
Query: 212 KYLENLVKLCFAFSEFNYRKSPCLKGKEKENTSTXEPSKSIPQKKMLALT*QMTTTRRHL 391
KYL + KL F + K K +K+ P KK L+ + ++H+
Sbjct: 273 KYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPNKKARVLSKKEERLKKHI 332
Query: 392 DSLTSRASMMKAKTTVKRSWKRKCWRS 472
L RA + K + ++ R+ W S
Sbjct: 333 KKLQKRALQFQGKVGLPKA--RRPWES 357
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,687,183
Number of Sequences: 237096
Number of extensions: 1133606
Number of successful extensions: 2978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2949
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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