Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A24
         (928 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34400.1 68417.m04886 transcriptional factor B3 family protei...    33   0.27 
At3g48710.1 68416.m05319 expressed protein putative protein - Ar...    33   0.35 
At2g10870.1 68415.m01159 hypothetical protein                          33   0.35 
At1g76780.1 68414.m08935 expressed protein ; expression supporte...    33   0.35 
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    32   0.62 
At3g58220.1 68416.m06491 meprin and TRAF homology domain-contain...    28   7.6  
At1g11740.1 68414.m01347 ankyrin repeat family protein contains ...    28   7.6  

>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 389

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +1

Query: 274 TMPKGKRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLK--SIHDEGENDSQEK 447
           T+PK ++KGK +    E     EED   D  +D Y ET GQ D++  SI +E  + + +K
Sbjct: 195 TIPKSQKKGKKKEQVVESS-DDEEDEEEDSDSD-YIETFGQLDIEENSISEEDSSYAPDK 252



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 274 TMPKGKRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDE-GENDSQEKL 450
           T+P+G+ KGK +    E     EE+  +   +   +ET   S+ K       ++  + K 
Sbjct: 146 TVPEGRDKGKSKVEVVEDSDDDEEEDSVYSESSEETETDTDSEFKVAKPTIPKSQKKGKK 205

Query: 451 EEKVLEIID 477
           +E+V+E  D
Sbjct: 206 KEQVVESSD 214


>At3g48710.1 68416.m05319 expressed protein putative protein -
           Arabidopsis thaliana, EMBL:AL078465.1
          Length = 462

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 283 KGKRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSE--TSGQSDLKSIHDEGENDSQEKLEE 456
           K +R+ K +   TE E + E D G + TND+  E   + + +     D    D ++K +E
Sbjct: 236 KRRRQAKKQEQPTETEGNGESDVGSEGTNDSNGEDDVAPEEENNKSEDTETEDEKDKAKE 295

Query: 457 K 459
           K
Sbjct: 296 K 296


>At2g10870.1 68415.m01159 hypothetical protein
          Length = 83

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 289 KRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHD---EGEND 435
           KRKGK    R E+E   E + G+D  N+      G  D  ++ D    GEND
Sbjct: 32  KRKGK--RVRLEEEEDDEPELGVDANNEEDCGVYGDEDCDAVEDIVGGGEND 81


>At1g76780.1 68414.m08935 expressed protein ; expression supported
           by MPSS
          Length = 1871

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 271 ITMPKGKRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEKL 450
           ITMPK  +         E+E   EE+  +D++   + E + + +LK  + E  +   E++
Sbjct: 46  ITMPKRVKGISGFKIEEEEEEEEEEEERVDVSEAEHKEETEKGELKDDYLEKSHQIDERI 105

Query: 451 EEK 459
           EE+
Sbjct: 106 EEE 108


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 283 KGKRKGKYEHXRTEQEYSSEEDAGIDMTNDNYSETSGQSDLKSIHDEGENDSQEKLE 453
           KG +  K +     +E  S ED G +    N  +   +SD  +  DE  ++S+E ++
Sbjct: 160 KGGKLNKAKKPVDVKESESSEDGGKESDTSNSEDVQKESDTSNSEDESASESEESMQ 216


>At3g58220.1 68416.m06491 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 487

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
 Frame = +1

Query: 292 RKGKYEHXRTEQEYSSEEDAGIDMTNDNYSET-----SGQSDLKSI--HDEG--ENDSQE 444
           +K   E  R   EY SEE++  D  ND   E+      G   LK I  +D+G   NDS  
Sbjct: 274 KKDSEEGSRERYEYESEEESKKDSENDCGEESEKDSEEGSRPLKKIKRNDDGVKSNDSVN 333

Query: 445 KLEEKVLEIID 477
           K ++ V E +D
Sbjct: 334 KTQQ-VKETMD 343


>At1g11740.1 68414.m01347 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 624

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 397 SDLKSIHDEGENDSQEKLEEKVLEIID 477
           +D + IH E ++ SQE++ EK+  +ID
Sbjct: 45  TDPEQIHTESDSMSQERVAEKISTVID 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,626,244
Number of Sequences: 28952
Number of extensions: 157465
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)