Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A20
         (888 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    50   1e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    49   1e-04
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    43   0.009
UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    41   0.037
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.048
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    35   2.4  
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    34   4.2  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 541 CINESANXRGEAVCXLGALPXPRSLTRCARSFGCGXRYQL-TQRR*YGYPXNQGIXQ 708
           CI + A  R EAV  L ALP  RS TRC RS GCG      +  R YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +1

Query: 565 RGEAVCXLGALPXPRSLTRCARSFGCGXRYQLT 663
           R   +C  G +P PRSLTR ARSFGCG RY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 18/23 (78%), Positives = 18/23 (78%)
 Frame = -1

Query: 717 CXFLXYPLIXWITVLPPLSELIP 649
           C F  YPLI WITVLPPLSEL P
Sbjct: 27  CSFRLYPLILWITVLPPLSELTP 49


>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 41.1 bits (92), Expect = 0.037
 Identities = 21/26 (80%), Positives = 21/26 (80%)
 Frame = +2

Query: 134 LKLENG*TDLANFGLELFVEVQTRFK 211
           LKLENG TDLANFGLEL VEVQ   K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.048
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 539 SALMNRPTRGERRFAYW 589
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = -2

Query: 593 APNXQTASPRXLADSLMQ 540
           APN QTASPR LADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = +3

Query: 657 AHSKAVIRLSTXSGDXXGXN 716
           AHSKAVIRLST SGD  G N
Sbjct: 39  AHSKAVIRLSTESGDNAGKN 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,574,880
Number of Sequences: 1657284
Number of extensions: 4968581
Number of successful extensions: 7139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7139
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)