Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A19
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   3e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.12 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.47 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.63 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   1.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 529 PPPPRGGGXXXFXPPPPPPXXNXXAPGG 612
           PPPP   G     PPPPPP     + GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.9 bits (64), Expect(2) = 3e-04
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 758 PPPPPPXXKKXXXPPPXXXRPP 823
           PPPPPP       PPP    PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect(2) = 3e-04
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 569 PPPPPPXXTXXPRXXXXXXXXXXXXXGXPPPPP 667
           PPPPP      P              G PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 29.5 bits (63), Expect = 0.63
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 711 PQPPKNPXGXVXXXLXPPPPPP 776
           P PP  P G       PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 758 PPPPPPXXKKXXXPPPXXXRPPP 826
           PPPPPP        PP    PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +2

Query: 758 PPPPPPXXKKXXXPPPXXXRPPPXXPXXPP 847
           PPPPP        P P    PP      PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 553 PPPPXGGGXXXXXKXXXPPPPP 488
           PPPP   G         PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 757 PPPPPPXXKKXXXPPXXXXXPPP 825
           PPPPPP        P     PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 279 PPXPXXPXXGGGPPXXXXKXXXGXGXPP 362
           P  P  P  GG PP        G G PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +2

Query: 533 PPXGGGGXXXXXPPPPPPXXTXXPRXXXXXXXXXXXXXGXPPPPPK 670
           PP G G      PPPPPP  +                   PPPPP+
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRS---NAAGSIPLPPQGRSAPPPPPPR 367



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
 Frame = +3

Query: 654 PPPPQXRGKXXKKIXXXXXPQPPKNPXGXVXXXLXPPPPPPXKKXXXT---PXRXXXAPP 824
           PPPP  R +           +PP    G     L PPPPPP      +   P +   APP
Sbjct: 314 PPPPSRRNRG----------KPPIG-NGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362

Query: 825 P 827
           P
Sbjct: 363 P 363



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +2

Query: 758 PPPPPPXXKKXXXPPPXXXRPPPXXPXXPP 847
           PPPPPP  +    PP          P  PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
 Frame = +2

Query: 758 PPPPPPXXK----KXXXPPPXXXRPPPXXPXXPP 847
           PPPPPP           PP     PPP  P   P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 529 PPPPRGGGXXXFXPPPPPPXXN 594
           PP   G       PPPPPP  N
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSN 346



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 758 PPPPPPXXKKXXXPPP 805
           PPPPPP  ++    PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 662 GGGXPPXXGGGGXXPPXPPGAXXFXXGGGGG 570
           GGG     GG G  PP P G   F   GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -2

Query: 846 GGFXGXXGGGRXXXGGGXXXFFXXGGGGGG 757
           GG  G  GGG    GGG   F    GG GG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = -3

Query: 659 GGXPPXXGGGGXXPPXPPGAXXFXXGGGGGGXKXXXPPPRGGG 531
           GG     GGG   PP  PG      G GG G         GGG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -3

Query: 665 GGGGXPPXXGGGGXXPPXPPGAXXFXXGGGGGGXKXXXPPPRGGGG 528
           G GG P    GG       PG      GG GGG       P G GG
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = -3

Query: 665 GGGGXPP-XXGGGGXXPPXPPGAXXFXXGGGGGGXKXXXPPPRGGGG 528
           G GG PP   G GG       G      GG GGG       P G GG
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = -1

Query: 844 GXXXXXGGGAXXXRXGVXXFFXXGGG-GGGXXXXXTXPXGFFGGWG 710
           G     GGG      G   F    GG GGG       P GF GG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 846 GGFXGXXGGGRXXXGGGXXXFFXXGGGGGG 757
           GGF G  GG     GG        GGG GG
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -2

Query: 843 GFXGXXGGGRXXXGGGXXXFFXXGGGGGG 757
           G  G  GGG    GGG   F    GG GG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 757 PPPPPPXXKKXXXPPXXXXXPPPPXXXK 840
           PPPPPP  +    PP     PPPP   K
Sbjct: 11  PPPPPPGFEPPSQPP----PPPPPGYVK 34



 Score = 29.5 bits (63), Expect = 0.63
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 529 PPPPRGGGXXXFXPPPPPP 585
           PPPP  G      PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 29.1 bits (62), Expect = 0.83
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 711 PQPPKNPXGXVXXXLXPPPPPP 776
           P PP  P G       PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 0.83
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 529 PPPPRGGGXXXFXPPPPPP 585
           PPPP G       PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 553 PPPPXGGGXXXXXKXXXPPPPPXEKKK 473
           PPPP   G     +   PPPP   KK+
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 758 PP--PPPPXXKKXXXPPPXXXRPPPXXPXXPP 847
           PP  PPPP       PPP    PP   P  PP
Sbjct: 5   PPGNPPPP-------PPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 762 PPPPPXKKXXXTPXRXXXAPPPXXXK 839
           PPPPP       P +    PPP   K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 758 PPPPPPXXKKXXXPPPXXXRPPP 826
           PPPPPP   +    PP    PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP--PPP 30



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 529 PPPPRGGGXXXFXPPPPPP 585
           PPPP   G      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -2

Query: 846 GGFXGXXGGGRXXXGGGXXXFFXXGGGGG 760
           GGF G  GG R   GG     F  G  GG
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 562 FXPPPPPPXXNXXAPGG 612
           F PPPPPP     A GG
Sbjct: 944 FPPPPPPPPPLVSAAGG 960


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +2

Query: 758  PPPPPPXXKKXXXPPPXXXRPPPXXPXXPP 847
            PPPPP         PP    PP   P   P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.150    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,206
Number of Sequences: 5004
Number of extensions: 36364
Number of successful extensions: 443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)