Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A17
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1160 - 24430240-24431268                                         32   0.76 
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    29   4.1  

>07_03_1160 - 24430240-24431268
          Length = 342

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +3

Query: 732 PGXSPWKPPRALSCSXPCRSXSGIPVPPFLPFXESGGXLSPXXXPLLGXXQXPGVXXVSP 911
           P  +P  PP       P     G P+PP  P  +      P   PL    Q P      P
Sbjct: 74  PLPNPDVPPMNKPDVPPMPKPDGPPIPPVQPCPDQPPQPKPDGPPLPNPNQPPQPNPNGP 133

Query: 912 PKP 920
           PKP
Sbjct: 134 PKP 136


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 18/61 (29%), Positives = 23/61 (37%)
 Frame = +3

Query: 732 PGXSPWKPPRALSCSXPCRSXSGIPVPPFLPFXESGGXLSPXXXPLLGXXQXPGVXXVSP 911
           P  +P  PP  +  + P RS    P P   P  +    LSP   P       P    +SP
Sbjct: 79  PAETPGLPPAGVEDAPPRRSPREKPCPTMQPPVKPPEELSPVGAPRSRVRAMPPSPSLSP 138

Query: 912 P 914
           P
Sbjct: 139 P 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,774,526
Number of Sequences: 37544
Number of extensions: 305274
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)