Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A16
(881 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42438-3|AAF99866.1| 94|Caenorhabditis elegans Downstream of m... 109 2e-24
AF016224-3|AAC27123.1| 94|Caenorhabditis elegans cyclin kinase... 109 2e-24
AC025726-28|AAK73928.1| 118|Caenorhabditis elegans Hypothetical... 106 2e-23
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 30 2.5
AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical... 29 5.8
AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical... 29 5.8
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 7.7
>U42438-3|AAF99866.1| 94|Caenorhabditis elegans Downstream of mes
(in same operon)protein 6 protein.
Length = 94
Score = 109 bits (263), Expect = 2e-24
Identities = 45/69 (65%), Positives = 55/69 (79%)
Frame = +1
Query: 250 SRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQP 429
+ D YYS KY D+E EYRHV + K++ KL+PKN LMSE EWRS+G+QQS GW+HYM H P
Sbjct: 5 NNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGP 64
Query: 430 EPHILLFRR 456
E H+LLFRR
Sbjct: 65 ERHVLLFRR 73
>AF016224-3|AAC27123.1| 94|Caenorhabditis elegans cyclin kinase
subunit protein.
Length = 94
Score = 109 bits (263), Expect = 2e-24
Identities = 45/69 (65%), Positives = 55/69 (79%)
Frame = +1
Query: 250 SRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQP 429
+ D YYS KY D+E EYRHV + K++ KL+PKN LMSE EWRS+G+QQS GW+HYM H P
Sbjct: 5 NNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGP 64
Query: 430 EPHILLFRR 456
E H+LLFRR
Sbjct: 65 ERHVLLFRR 73
>AC025726-28|AAK73928.1| 118|Caenorhabditis elegans Hypothetical
protein Y71G12B.27 protein.
Length = 118
Score = 106 bits (254), Expect = 2e-23
Identities = 44/68 (64%), Positives = 53/68 (77%)
Frame = +1
Query: 256 DIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEP 435
DIYYS +Y D+E+EYRHV+LP+ + + VPK L+SE EWR GVQQS GW HYM H PE
Sbjct: 3 DIYYSPRYEDDEYEYRHVILPQAVSRKVPKGRLLSEAEWRRAGVQQSLGWEHYMVHNPEK 62
Query: 436 HILLFRRR 459
HILLFRR+
Sbjct: 63 HILLFRRK 70
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/87 (24%), Positives = 40/87 (45%)
Frame = -3
Query: 531 YTFYS*MMGQKTHFISIFFWWCCYPPSE**NMWFWLMCHIVHPTLTLLHTDAAPLLF*H* 352
Y+F+ M+ + +FF CY N+ W H++ L +++T L
Sbjct: 1143 YSFWINMLDAVWQSLVVFF--ICYFTYRGSNVDMWTFGHLLVTQLIIVNTFHLALF---- 1196
Query: 351 MVFWH*LYHLFW*YYMSVFMFFVIIFL 271
+ +W + +FW ++SV +FF+ L
Sbjct: 1197 VQYW--TWPMFWSMFLSVLLFFICALL 1221
>AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical
protein C18E3.9b protein.
Length = 302
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 340 PKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPHILLFRRRITTPPEK 480
P+N M E S+ Q Q W+ + + ++LL R ++ P EK
Sbjct: 40 PENRAMQESIINSVSEQTLQSWIDFREEINKKNLLL-RNKLKIPSEK 85
>AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical
protein C18E3.9a protein.
Length = 298
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 340 PKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPHILLFRRRITTPPEK 480
P+N M E S+ Q Q W+ + + ++LL R ++ P EK
Sbjct: 40 PENRAMQESIINSVSEQTLQSWIDFREEINKKNLLL-RNKLKIPSEK 85
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 211 EIFLSRNLLRDIMSRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQ 390
E FL LR + + + + + E+E R + ++ +LV NH MSEQ + V+
Sbjct: 2754 ESFLDHTNLRSKLQKHMAFDSELV--ENEKRLSTVERQGEQLVTDNHFMSEQVKAQL-VE 2810
Query: 391 QSQGW 405
GW
Sbjct: 2811 LRSGW 2815
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 211 EIFLSRNLLRDIMSRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQ 390
E FL LR + + + + + E+E R + ++ +LV NH MSEQ + V+
Sbjct: 2754 ESFLDHTNLRSKLQKHMAFDSELV--ENEKRLSTVERQGEQLVTDNHFMSEQVKAQL-VE 2810
Query: 391 QSQGW 405
GW
Sbjct: 2811 LRSGW 2815
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 211 EIFLSRNLLRDIMSRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQ 390
E FL LR + + + + + E+E R + ++ +LV NH MSEQ + V+
Sbjct: 2754 ESFLDHTNLRSKLQKHMAFDSELV--ENEKRLSTVERQGEQLVTDNHFMSEQVKAQL-VE 2810
Query: 391 QSQGW 405
GW
Sbjct: 2811 LRSGW 2815
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,797,996
Number of Sequences: 27780
Number of extensions: 418053
Number of successful extensions: 972
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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