Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A15
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    28   2.0  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         27   2.6  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   6.0  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   7.9  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 499 ECIASKVMYDSGTDSTHDEFTNLDNLSSTIVITLVCAAHT--LSLC 368
           EC+A  V   S + +  + F NL    + ++  L C  HT  +SLC
Sbjct: 78  ECVAPFVWTLSSSSNERESFENLIFEHACLIYRLACTYHTTAISLC 123


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -3

Query: 690 SLKRVSMSLACQRYIGTHSYDKI---YEMSQELVS*YGLTSVNVVARVTESGTNFVWAFK 520
           SL +V  +    + + TH  + I    + +++ V   G  +  + A   ESG++F  A K
Sbjct: 450 SLGKVEEAEGSDKVMPTHMENGISPTLKENEQTVQSVGDNAKKIHASSEESGSSFSKALK 509

Query: 519 SFGVNRMNVSRARSCMTPVPIV 454
           SF V   + S +++  T +P+V
Sbjct: 510 SF-VGLFSYSASKTTDTEIPLV 530


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 502 HECIASKVMYDSGTDSTHDEFTNLDNLSSTIVITLVCAAHTLSLCVTDANKILENQETEL 323
           ++ IAS  + D    S+ DE  + + ++S  ++ +VC  +  S         LEN E   
Sbjct: 239 NQSIASWTIIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRS------QNQLENHEN-- 290

Query: 322 SKMHDQTIKKM 290
           SK H + ++KM
Sbjct: 291 SKKHKKNLRKM 301


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 440 EFVMCTIGTGVIHDLARDTFMRFTPKLLKAQTKLV 544
           E+ +C++  G++ DLAR    +  P      T+LV
Sbjct: 654 EYQLCSVAVGLVGDLARALNAKILPYCDDFMTRLV 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,064
Number of Sequences: 5004
Number of extensions: 58996
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)