Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A15
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36740.1 68418.m04402 PHD finger family protein                     36   0.035
At5g36670.1 68418.m04388 PHD finger family protein                     36   0.035
At2g35950.1 68415.m04413 expressed protein                             32   0.43 

>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 571 CCGACYRKWHQFCLGL*KFRSKSHECIASKVMYDSGTDSTHDEFTNLDNLSSTIVITLVC 392
           CC  C   +HQ CL + KF S +  C      +    ++   E + L +LSS  +    C
Sbjct: 664 CCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKC 723

Query: 391 AAH 383
           + H
Sbjct: 724 SKH 726


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 571 CCGACYRKWHQFCLGL*KFRSKSHECIASKVMYDSGTDSTHDEFTNLDNLSSTIVITLVC 392
           CC  C   +HQ CL + KF S +  C      +    ++   E + L +LSS  +    C
Sbjct: 664 CCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLSSCRLCEEKC 723

Query: 391 AAH 383
           + H
Sbjct: 724 SKH 726


>At2g35950.1 68415.m04413 expressed protein
          Length = 136

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 455 TIGTGVIHDLARDTFMRFTPKLLKAQTKLVPLSVTR 562
           ++GTGV H L R TF  F P  +K  +KL+ LS ++
Sbjct: 98  SVGTGVFHPLQRPTFKTFDP--VKKHSKLLHLSSSK 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,208
Number of Sequences: 28952
Number of extensions: 290025
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)