Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A12
         (909 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   4.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   4.4  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   7.6  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    22   7.6  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    22   7.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   7.6  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 425 VKPLKTSLSATKTLDIPFALAMDSAAGPH 339
           +KP   S S+++ LDIP  +  D ++G H
Sbjct: 22  IKPQSPS-SSSRILDIPCKVCGDFSSGKH 49


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 425 VKPLKTSLSATKTLDIPFALAMDSAAGPH 339
           +KP   S S+++ LDIP  +  D ++G H
Sbjct: 22  IKPQSPS-SSSRILDIPCKVCGDFSSGKH 49


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 352 QQVHIWFQPQALRHHLQ 302
           +QV +WFQ + ++H  Q
Sbjct: 46  RQVKVWFQNRRMKHKRQ 62


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 352 QQVHIWFQPQALRHHLQ 302
           +QV +WFQ + ++H  Q
Sbjct: 177 RQVKVWFQNRRMKHKRQ 193


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 352 QQVHIWFQPQALRH 311
           +Q+ IWFQ + ++H
Sbjct: 130 RQIKIWFQNRRMKH 143


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 726 CFINCCRPSLQRLCRECCTT 667
           C++    P L  LCR+ C T
Sbjct: 72  CYMLFREPQLHNLCRKNCFT 91


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 726 CFINCCRPSLQRLCRECCTT 667
           C++    P L  LCR+ C T
Sbjct: 72  CYMLFREPQLHNLCRKNCFT 91


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 803 VSSGLSDLVNSCFKNSTRSV 744
           V S    LVNS ++N+TR V
Sbjct: 209 VLSRAGGLVNSLYQNATRKV 228


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 352 QQVHIWFQPQALRH 311
           +Q+ IWFQ + ++H
Sbjct: 121 RQIKIWFQNRRMKH 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,303
Number of Sequences: 336
Number of extensions: 4315
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)