Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A12
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   164   2e-41
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   8.5  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.5  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  164 bits (398), Expect = 2e-41
 Identities = 92/247 (37%), Positives = 142/247 (57%), Gaps = 2/247 (0%)
 Frame = +1

Query: 172 APNSRHLFLSAQLRRLQSTLXLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPA 351
           A +S +  ++   R   S L L EH    LSPA+ + + AAK+ GGDV   V G      
Sbjct: 12  ALSSSNFKINCGRRHWFSVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQI 71

Query: 352 AESIAKA-NGISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPR 528
           ++ +AK+ N + KV+  E+  ++    + +  ++    K+ + +H+ +  +  GK V+PR
Sbjct: 72  SQKVAKSVNDLKKVIYVENPSYEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPR 131

Query: 529 VAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGS 708
           +AA  DV  I+DIIG+  A+TFVR  YAGN  +T+  KDPIK++TVR +AF A P  G  
Sbjct: 132 LAAMFDVMQISDIIGVVSADTFVRPTYAGNVNVTVSTKDPIKIVTVRASAFDAAPSSGEG 191

Query: 709 AAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRGLKSXDNF-KLLYDLXDK 885
           AA            L E++ + + K+ RP+L+SA+ +V+GGR LK  + F ++L  L DK
Sbjct: 192 AATVVEGIDPKPAALQEWVSENIIKNARPDLSSAERVVAGGRPLKDKETFERILTPLADK 251

Query: 886 LNAAGGA 906
           L AA GA
Sbjct: 252 LGAAIGA 258


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 824 DTIFLALVSSGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNA 675
           DT+ L   ++GLS    S   NST+    SPS     +AD  S+G +  A
Sbjct: 825 DTLSLKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSGISKKA 874


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 797 SGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNI 621
           SGL +L N+C+ NST  +L     A+   +D  S  ++   +     TL+ S+ S   +
Sbjct: 100 SGLINLGNTCYMNSTVQML----RAIPELSDAVSQFNSSGGLVAEYRTLLNSMQSNAPV 154


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 361 WILQQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCC 245
           WIL++ +I+F+   ++   +F + +++   LL    +CC
Sbjct: 2   WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,626
Number of Sequences: 5004
Number of extensions: 68691
Number of successful extensions: 196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)