Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A12
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 156 2e-38
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 38 0.008
01_06_1098 + 34518608-34519546 32 0.55
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073... 31 1.3
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 5.1
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 29 5.1
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 29 5.1
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 29 6.7
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 29 6.7
03_02_0233 - 6622345-6622538,6623526-6624120 29 6.7
01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857 29 6.7
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 28 8.9
02_05_1275 - 35395228-35395642,35396682-35397250 28 8.9
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 156 bits (379), Expect = 2e-38
Identities = 98/246 (39%), Positives = 150/246 (60%), Gaps = 13/246 (5%)
Frame = +1
Query: 208 LRRLQSTLXLAEHNNEVLSPATQNTLNAAKKIGGD---VSVLVAGTKCG--PAAESIAKA 372
L R STL +AEH + P++ + L AA+ IG D VS+L+ G+ G AAE A +
Sbjct: 27 LPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASS 86
Query: 373 NG-ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDV 549
+ +S+VLVA+SDVF AE L+ + Q + ++H++A +T+FGK +LPR AA LDV
Sbjct: 87 HPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKGGYSHVIASSTSFGKNLLPRAAALLDV 146
Query: 550 SPITDIIGIKDANTFVRTIYAGNAILTLE--AKDPIKVITVRGTAF-PAEPLEGGSAA-- 714
SP+TD+ I + FVR IYAGNA+ T+ +DP ++++R T+F P E + A
Sbjct: 147 SPVTDVTSISEPRVFVRPIYAGNALCTVRYTGEDPC-MMSIRSTSFSPTEAMSEAKVAPI 205
Query: 715 --IDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRGLKSXDNFKLLYDLXDKL 888
+D + + + ++ + ++RP+L +A +V+GGRGLKS +NFK+L L +KL
Sbjct: 206 TQVDLSFLSEGSSGKSAWVNLKSQDTERPDLANAPVVVTGGRGLKSAENFKVLEQLAEKL 265
Query: 889 NAAGGA 906
AA GA
Sbjct: 266 GAAVGA 271
>03_02_0993 -
13058785-13059025,13059188-13059264,13062157-13062351,
13062650-13062811,13062915-13063044,13063082-13063149,
13063244-13063291,13063383-13063448,13063739-13063818,
13064644-13064737
Length = 386
Score = 38.3 bits (85), Expect = 0.008
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 238 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 360
+ +NN +L PA N ++ A+K+ GD+S++V G G A S
Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGALAS 209
>01_06_1098 + 34518608-34519546
Length = 312
Score = 32.3 bits (70), Expect = 0.55
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 842 FKPRPPDTIFLALVSSGLSDLV-NSCFKNSTRSVL*SPSGALSIAADPPSNGSAG 681
FKPR PD L+L SGL ++ N+ + V SP ++ AD P NG G
Sbjct: 137 FKPRQPDYTLLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADNP-NGKIG 190
>07_03_0716 +
20905041-20905851,20906644-20906825,20907117-20907330,
20907416-20907653,20907905-20908058,20908190-20908461,
20908703-20908808
Length = 658
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 691 PLEGGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRG 837
P + I PEG YKT+L++ K +T ++ +L SA N +G G
Sbjct: 25 PFCSNANTITHMPEGTYKTNLLQLAKNLITNVNQTQLHSA-NGTAGAAG 72
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 259 LSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 360
L P T LNAA + G + G+ C P A S
Sbjct: 121 LDPLTHRPLNAAAAVAGHHHLAAGGSSCSPDATS 154
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 343 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 254
H+WF P A HH W L++ VP
Sbjct: 164 HLWFDPTAGFHHYAILWNPDQILFLVDDVP 193
>07_03_1621 +
28187846-28187915,28189214-28189293,28189485-28189550,
28189801-28189848,28189967-28190034,28190107-28190179,
28190284-28190445,28190620-28190814,28191114-28191190,
28191280-28191481
Length = 346
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 238 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 360
+ +NN +L A + ++ A++ GD++V+V G G A S
Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGAMAS 182
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 208 LRRLQSTLXLAEHNNEVLSPATQNTLNAAKKIGGDVS-VLVAGTKCGPAAESIAKANGIS 384
L +L+ + H LSP + + G + S VLVA K G E I+ + +
Sbjct: 99 LAQLEKIRDESRHQQTELSPDNMTDIPYTEGGGKNGSWVLVACDKPGANMEEISGIDNEN 158
Query: 385 KVLVAESDVFKGFTA 429
VLV + D+ G T+
Sbjct: 159 YVLVNDDDIIDGMTS 173
>03_02_0473 +
8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 712 AIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRG 837
A D+A +D VE L +L ++ +PE T N +S G G
Sbjct: 490 AYDEAANLQSYSDNVESLDSDLNENSQPEATRKANPLSNGHG 531
>03_02_0233 - 6622345-6622538,6623526-6624120
Length = 262
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 460 QKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGN 618
+K + F A A A G + LPR A +SP + ++ + A +FV + +G+
Sbjct: 67 EKDWSFLDAAAAAAAAGGS-LPRALAAGALSPASRVLAVTPAPSFVDALLSGH 118
>01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857
Length = 92
Score = 28.7 bits (61), Expect = 6.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 612 SINCSHKGISILDTNDISYW*HIKLGRNS 526
++ C + I++ +D YW HIK+ R++
Sbjct: 23 AVGCRRRSHHIIECDDAEYWHHIKIERST 51
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 821 TIFLALVSSGLSDLVNSCFKNSTRSV 744
T FLAL S LSD +NS F S R +
Sbjct: 442 TAFLALCHSRLSDYINSIFPMSGRGI 467
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 343 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 254
H+WF P A HH W L++ VP
Sbjct: 168 HLWFDPTADFHHYAILWTSDHIIFLVDDVP 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,442,396
Number of Sequences: 37544
Number of extensions: 451396
Number of successful extensions: 1339
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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