Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A12
         (909 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   2e-36
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 33   0.42 
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.74 
SB_36599| Best HMM Match : PSGP (HMM E-Value=5.5)                      31   1.3  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               29   5.2  
SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_36921| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)                   28   9.1  
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)                  28   9.1  
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)            28   9.1  
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)              28   9.1  
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              28   9.1  

>SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score =  150 bits (363), Expect = 2e-36
 Identities = 71/122 (58%), Positives = 93/122 (76%)
 Frame = +1

Query: 541 LDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAID 720
           LDV+P++DI+ I   +TFVRTIYAGNA+ T+++ DPIKV+TVRGTAF A   +GG+   +
Sbjct: 2   LDVAPLSDIMEILSEDTFVRTIYAGNAVTTIKSTDPIKVMTVRGTAFEAASTDGGAVTAE 61

Query: 721 KAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRGLKSXDNFKLLYDLXDKLNAAG 900
            AP  D   +L  F+KQ+L  SD PELTSAK +VSGGRG+KS +NF++LYD+  KLNAA 
Sbjct: 62  DAPSSDTNNELSSFVKQDLHVSDLPELTSAKVVVSGGRGMKSGENFQMLYDMAAKLNAAV 121

Query: 901 GA 906
           GA
Sbjct: 122 GA 123


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 151 ILLIKMFAPNSRHLFLSAQLRRLQSTLXLAEHNNEVLSPATQNTLN 288
           ++L+    PNS H FL A L  +++ L L     + + P TQ  +N
Sbjct: 502 LILVPCNTPNSNHWFLLAVLPHMKAVLLLDSRAVDYVKPPTQKAMN 547


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 152  SCLSKCLHP-IAGIYFCLHSCVVCKVLXCSPSTTMRYYLQQPKIH*MLPRKLEVMSQCLW 328
            +CL  C++P ++ ++ C  +CV   V  CSP     +      ++  + R L  +S C+ 
Sbjct: 1266 TCLFACVYPSVSRVFTCRSACVHLSVRVCSPVCPRVFTCLFACVYPSVSRVLTCLSACVH 1325

Query: 329  LEPNV 343
            L   V
Sbjct: 1326 LSVRV 1330


>SB_36599| Best HMM Match : PSGP (HMM E-Value=5.5)
          Length = 114

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 604 IYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAP---EGDYKTDLVEFLKQE 774
           ++ GN + T+    P+K +T RGT +       G A ID  P   +GD    + E L+ E
Sbjct: 44  VFQGNVVNTIRQAPPVKTLTERGT-YEISTGPSGLAIIDLYPSFLDGDETECMFEQLQAE 102

Query: 775 L 777
           +
Sbjct: 103 I 103


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +1

Query: 430 ETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRT 603
           E   PL+   Q    F  +++ A   G+T  P    + D+SP    +     N +V T
Sbjct: 357 ENFVPLLQRRQAPLLFVRVVSQALETGRTTSPSWDYRPDMSPFHGTLTSPSGNVYVAT 414


>SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 514 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 627
           T +P+V A+L    +  ++    AN FV  +Y   AI+
Sbjct: 289 TAIPKVVARLGAQKLNGVLHPGTANVFVGVLYGATAIV 326


>SB_36921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +1

Query: 601 TIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGDYKTDLVEFLKQELT 780
           T++   +IL L A   + ++T+      A    GG     K PEG Y+T  V+ L+ EL 
Sbjct: 42  TVFPIWSILVLGASSVVLLVTL----LAAFEFFGGCLCAGKNPEGKYRTVEVKRLELELN 97

Query: 781 KS 786
           K+
Sbjct: 98  KT 99


>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
          Length = 1346

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 514 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 627
           T +P+V ++L    +  ++    AN FV  +Y  +AI+
Sbjct: 278 TAIPKVVSRLGAQKLNRVVHPGTANVFVGALYGASAIV 315


>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
          Length = 490

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 453 GYTKTVQIHSYLSTSNCFRKDGAATSCG 536
           G TKT Q H   ST   F KDGA    G
Sbjct: 194 GDTKTFQSHGCRSTCGMFMKDGARAIAG 221


>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
          Length = 670

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 514 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 627
           T +P+V ++L    +  ++    AN FV  +Y  +AI+
Sbjct: 278 TAIPKVVSRLGAQKLNRVVHPGTANVFVGVLYGASAIV 315


>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 440

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -2

Query: 419 PLKTSLSATKTLDIPFALAMDSAAGPHLVPATSTETSPPIFLAAFNVFWVAGDSTS 252
           P  T + AT T+       +  A  P L P    + S P+F AA NV      STS
Sbjct: 175 PPSTLMGATGTVSTVGVPGLGGAQNP-LGPGPQVQASKPLFPAAQNVNGTVASSTS 229


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 212 VVCKV-LXCSPSTTMRYYLQQPKIH*MLPRKLEVMSQCLWLEPNVDLLQNPLLRQMVYLK 388
           V C++ L CS  + ++  L+Q  +H +   K  V     W E  V +  NP  R++  LK
Sbjct: 3   VSCRLDLYCSTYSCLKELLKQKDVHVLARMKNPVYGPACWYEQTVVI--NPTRRRLKQLK 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,573,238
Number of Sequences: 59808
Number of extensions: 519276
Number of successful extensions: 1393
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)