Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A12
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 331 QPQALRHHLQFSWQHSMY 278
           Q QA + HLQ   QH MY
Sbjct: 187 QSQAQQQHLQAHEQHMMY 204


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 754 VEFLKQELTKSDRPELTSAKNIVSGGRGL 840
           V  L Q+  ++DR EL+  + + +GG  L
Sbjct: 112 VSGLTQQADQTDRDELSHVRALAAGGNHL 140


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 338 LVPATSTETSPPIFLAAFNVFWVAGDSTSLLCSASXKVLC 219
           ++ AT    +  + L    V W+   ST  + +AS  ++C
Sbjct: 254 ILHATYVIPAVTMMLLTLTVLWLDSRSTERMIAASVNLIC 293


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 364 QWILQQVHIWFQPQALRHHLQFSWQHS 284
           Q  +QQ  ++ Q Q  +HH   S +H+
Sbjct: 89  QSFMQQHSLYLQQQQQQHHQDSSSEHA 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,550
Number of Sequences: 438
Number of extensions: 4837
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)