Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A11
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.6
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 4.8
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 4.8
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 26 6.3
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 6.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.3
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 8.3
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 26 8.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 8.3
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 244 LIPNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLN 357
+I N P + + S+ ST V PPP P +L+ +N
Sbjct: 250 IIDNEIPKPSESPRRSVSSTPP-VHPPPPVPQNLSAVN 286
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 488 IVVHHKLGETPEFNVSVRK 544
+V HH+L + PEF SVRK
Sbjct: 226 LVNHHRLFQIPEFQDSVRK 244
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 505 FMMYHNSM*KKKLSYMLRVF*TIRFCQISILLAATVVV--VRQVSWDPSMS 359
F + NS KK+ + + R+F T+ F ++ LA + VR VS D S+S
Sbjct: 2 FSILGNSSKKKRNTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSDSSVS 52
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 250 PNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLNYSSK 369
P +EA + A I ++ S+ TP P+ S L NYS++
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATPRPKLSSLLYENYSNQ 422
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -3
Query: 506 IYDVPQFDVKKKIKLHATSILNYSVLSDFNPP 411
+Y + DV+ H S++ ++ DF+PP
Sbjct: 178 VYQIKVIDVQPDDSRHVVSVVETDLVVDFDPP 209
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 265 SEAPATEASIQSTEKSVQTPPPE 333
+E PA + + +ST+K PPP+
Sbjct: 158 TETPAPKVTSESTKKETAAPPPQ 180
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +1
Query: 211 PLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEPS 339
P T+ IP G S P T ++ S TPPP S
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 247 IPNNGPSEAPATEASIQSTEKSVQTPPPEPS 339
IP G S P T ++ S TPPP S
Sbjct: 345 IPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 375
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 184 SFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEP 336
+FP+ PL + P +P + PS +P+T ++ S P P
Sbjct: 188 AFPSSFSSLPLVSSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAP 238
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 8.3
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 82 FGSPAYGGFSQIGPYPYSFPGLRF-YDPFDSFSINSFPNFPLYRPLTNVLGQNVPLIPNN 258
+ SPA G + +G YP+ L D +I ++ + P+ +T L + +P
Sbjct: 123 YASPAEPGTAPLGTYPHPCVHLTVNTDVSSPLAIKTYVSSPV--GITERLADSCAFVPT- 179
Query: 259 GPSEAPATEASIQSTEKSVQTPPPEPSDL 345
P EA ++S K+V P +PS L
Sbjct: 180 -PFTIRDDEA-VRSGLKAVAAPKNDPSRL 206
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 8.3
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Frame = +1
Query: 46 PPQVLPIGRLDGFGSPAYGGFSQIGPYPYSF-PGLRFYDPFDSFSINSFPNFPLY----- 207
PP L G++D S A+ + P F P P F N F FP
Sbjct: 737 PPPGLRFGKVDTLASLAHDDLDDLPAVPRIFSPPPLPKTPSGEFGDNEFM-FPKKSNRVR 795
Query: 208 ----RPLTNVLGQNV-PL-IPNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLN 357
RP T +NV P+ I +G A E + S+ P P P+D N LN
Sbjct: 796 GHQSRPSTGSQLRNVVPVSIVTSGGRPALPDEMASPSSSIGHPLPSPPPADFNSLN 851
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 190 PNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEP 336
P+ P P++N+L P + P AP ++ S + PP P
Sbjct: 967 PSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVP 1015
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,650
Number of Sequences: 5004
Number of extensions: 51502
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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