Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A11
(895 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 31 1.7
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 29 3.8
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 29 6.7
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26) 29 6.7
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15) 29 6.7
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 28 8.9
SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083) 28 8.9
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 235 NVPLIPNNGPSEAPATEASIQST---EKSVQTPPPEPSDL 345
N P+ P PS AT S+ S+ E+S PPP P DL
Sbjct: 337 NTPIKPFT-PSPGVATSGSVSSSKLAEQSTPNPPPHPDDL 375
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 29.5 bits (63), Expect = 3.8
Identities = 29/81 (35%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Frame = +1
Query: 43 FPPQVLPIGRLDGFGSPAYGGFSQIGPYPYSFPGLRFYDPFDSFSINSFPNFP------L 204
FP +LP GF P G S P PG P S I F N+P L
Sbjct: 1267 FPGSILPQPGQSGFNLPGQTGSS----LPGQVPG----HPLISGQIGQFGNYPYSSYGLL 1318
Query: 205 YRPLTNVLGQNVPLIPNNGPS 267
+ P TN GQN P P N P+
Sbjct: 1319 FPPGTNYGGQN-PGSPLNQPT 1338
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +1
Query: 121 PYPYSFPGLRFYD---PFDSFSINSFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEAS 291
P+P PG+ + D P + + N PL ++ + + + P+ P T +
Sbjct: 480 PHPTRRPGVLYRDRTPPSSANATNMVEEVPLTSTRPSMPPRGIYKKAGSRPTTHPTTTTT 539
Query: 292 IQSTEKSVQTPPP 330
+ E+S Q PPP
Sbjct: 540 TTTWERSRQCPPP 552
>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
Length = 550
Score = 28.7 bits (61), Expect = 6.7
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Frame = +1
Query: 139 PGLRFYDPFDSFSINS---FP-----NFPLYRPLTNV-LGQNVPLIPNNGPSEAPATEAS 291
PG++ P D F NS P N PLY PLT V GQ I N PS+ T+
Sbjct: 70 PGVQDSAPNDGFVENSPTIVPVQNQQNTPLYSPLTQVENGQVYYAIVTNSPSQ--ETQCC 127
Query: 292 IQSTEKSVQTPP---PEPSDLNVLNYS 363
S E + TP + S + NYS
Sbjct: 128 SPSPELAPSTPTNGNAQVSSPEICNYS 154
>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
Length = 794
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 70 RLDGFGSPAYGGFSQIGPYPY-SFPGL 147
R++G G P G Q+G YP SFP L
Sbjct: 589 RVNGMGLPRRGSLPQVGSYPEGSFPSL 615
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 250 PNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLNYSSK 369
P+ E A + + + +VQTPPP P N + SSK
Sbjct: 202 PSLEEPEVSAMGTPVSTPQATVQTPPPPPEPSNEPSTSSK 241
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 253 NNGPS--EAPATEASIQSTEKSVQTPPPEPSDLNVLNYSSK 369
N GPS AP+ E S S++ + PPP PS Y S+
Sbjct: 2491 NTGPSFKPAPSDEDSDSSSQSTPSPPPPPPSWKGGYPYDSR 2531
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 247 IPNNGPSEAPATEASIQSTEKSVQTPPPEPSDL 345
+P++GP E A++ S +K ++ PP EP L
Sbjct: 146 VPDSGPGEKKASD----SVKKEIEEPPSEPQGL 174
>SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083)
Length = 216
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 321 SLYRFFRTLNTSFGGR-GLAWPVIRNERNVLT*NIGKRSVQREIRKRINRERVEGVVESQ 145
SLY R L FGG+ + + IRN L I ++ +RE+ ++ RE E E +
Sbjct: 62 SLYDNDRRLADHFGGKLHMGFIKIRNRLQELNEEIARKREERELERQKRREEREREREQE 121
Query: 144 TGE 136
E
Sbjct: 122 RRE 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,100,649
Number of Sequences: 59808
Number of extensions: 377202
Number of successful extensions: 990
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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