Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A11
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z73422-14|CAD37351.1| 441|Caenorhabditis elegans Hypothetical p... 30 1.9
Z73422-13|CAA97773.2| 443|Caenorhabditis elegans Hypothetical p... 30 1.9
Z70307-16|CAC42262.2| 441|Caenorhabditis elegans Hypothetical p... 30 1.9
Z70307-15|CAA94342.2| 443|Caenorhabditis elegans Hypothetical p... 30 1.9
AL008868-1|CAA15515.2| 213|Caenorhabditis elegans Hypothetical ... 29 3.4
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 29 5.9
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 7.8
AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical... 28 7.8
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 30.7 bits (66), Expect = 1.5
Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 2/117 (1%)
Frame = +1
Query: 28 GIP*DFPPQVLPIGRLDGFGSPAYGGFSQIGPYPYSFPGLR--FYDPFDSFSINSFPNFP 201
G P +PP +P G+ PAYG PY Y +R P D + P
Sbjct: 107 GYPAGYPPYGMPPRHHPGYPHPAYGYPPPGAPYGYPPQMMRPPMMAPGDMVRMPPGPTPT 166
Query: 202 LYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLNYSSKD 372
+ + + P GP+ PAT +S P P PS ++ S D
Sbjct: 167 EWAAQQQAQAASRSVPPKEGPNGNPATPSSSSQ-------PIPSPSASSIAEESLDD 216
>Z73422-14|CAD37351.1| 441|Caenorhabditis elegans Hypothetical
protein C39E9.14b protein.
Length = 441
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 262 PSEAPATEASIQSTEKSVQTPPPEPSD 342
P +A AT+A + KS Q+P P+P D
Sbjct: 412 PMDAAATQAQLDRLLKSAQSPKPQPRD 438
>Z73422-13|CAA97773.2| 443|Caenorhabditis elegans Hypothetical
protein C39E9.14a protein.
Length = 443
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 262 PSEAPATEASIQSTEKSVQTPPPEPSD 342
P +A AT+A + KS Q+P P+P D
Sbjct: 414 PMDAAATQAQLDRLLKSAQSPKPQPRD 440
>Z70307-16|CAC42262.2| 441|Caenorhabditis elegans Hypothetical
protein C39E9.14b protein.
Length = 441
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 262 PSEAPATEASIQSTEKSVQTPPPEPSD 342
P +A AT+A + KS Q+P P+P D
Sbjct: 412 PMDAAATQAQLDRLLKSAQSPKPQPRD 438
>Z70307-15|CAA94342.2| 443|Caenorhabditis elegans Hypothetical
protein C39E9.14a protein.
Length = 443
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 262 PSEAPATEASIQSTEKSVQTPPPEPSD 342
P +A AT+A + KS Q+P P+P D
Sbjct: 414 PMDAAATQAQLDRLLKSAQSPKPQPRD 440
>AL008868-1|CAA15515.2| 213|Caenorhabditis elegans Hypothetical
protein C53C7.3 protein.
Length = 213
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 166 DSFSINSFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPP 327
+ + P PL RP+ N + + VP+ PNN S S +++PP
Sbjct: 60 EQVDVQQEPAPPLERPILNEIIRPVPIRPNNNSSYRQYVPTPPPSLSHMMRSPP 113
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 229 GQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEPS 339
G P P N + A T + ST K+ T PP P+
Sbjct: 230 GSTSPTCPKNATAVASVTTTASTSTTKTSPTKPPTPT 266
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +1
Query: 145 LRFYDPFDSFSINSFPNFPLYRPLTNVLGQNVPLIPNNGP----SEAPATEASIQSTEKS 312
L+ DP D+ + P P PL ++L Q P P P + P +++ KS
Sbjct: 53 LQLKDPNDNIVKATPPPPPPPPPLISILQQAPPPPPPPPPPTLKAPPPPPILGLKTPSKS 112
Query: 313 VQTPPPEPSD 342
++TP P P +
Sbjct: 113 LKTPTPRPKE 122
>AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical
protein C09G12.9 protein.
Length = 425
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/86 (27%), Positives = 30/86 (34%)
Frame = +1
Query: 43 FPPQVLPIGRLDGFGSPAYGGFSQIGPYPYSFPGLRFYDPFDSFSINSFPNFPLYRPLTN 222
+PP P G Y Q PYP G P+ S S N P P P+T
Sbjct: 191 YPPSSTPYPSAGAMGYNPYMNVPQSTPYPMGASGA---SPYPSASSNPAPPPPRPPPVT- 246
Query: 223 VLGQNVPLIPNNGPSEAPATEASIQS 300
Q + G +A AS+ S
Sbjct: 247 --AQTSVSSSSGGTIQADTIRASVMS 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,048
Number of Sequences: 27780
Number of extensions: 289958
Number of successful extensions: 921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -