Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A10
         (972 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   1.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   6.3  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
 Frame = +3

Query: 684 PPPXXPSXGXRGGXPXXXXXXXPXG--XPPSXPPPXXPP 794
           P    PS G R G P       P G   P   P P  PP
Sbjct: 47  PGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYPRFPP 85


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 344 PSFYTRAGGGAEAXPPHRRGXXGXHPLRS 258
           PS  +  GGG    P    G    HPL S
Sbjct: 81  PSLSSGLGGGLSGMPMPALGFGLGHPLES 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,961
Number of Sequences: 336
Number of extensions: 2618
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27513178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)