Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A10
         (972 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.26 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +3

Query: 672 PXXGPPPXXPSXGXRGGXPXXXXXXXPXGXPPSXPPPXXPPGXPP 806
           P  G P   PS       P       P   PP   PP  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.78
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 660 SPPPPXXGPPPXXP 701
           SPP P  GPPP  P
Sbjct: 38  SPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +3

Query: 660 SPPPPXXGPPPXXPSXGXRGGXPXXXXXXXPXGXPPSXPP 779
           SP  P  G PP  PS G   G P         G PPS  P
Sbjct: 30  SPQAPQRGSPPN-PSQGPPPGGPP--------GAPPSQNP 60


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = +1

Query: 397 GGVPXRXEWXPPRGXGAXXWGAXP 468
           G +    EW PPR      W   P
Sbjct: 566 GSINTVAEWEPPRALWPTEWKVRP 589


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 660 SPPPPXXGPPPXXPS 704
           S  PP   PPP  PS
Sbjct: 335 SDTPPKPAPPPPPPS 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,545
Number of Sequences: 438
Number of extensions: 6048
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)