Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A09
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    31   0.18 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   2.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.8  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    26   6.7  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   8.9  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 51  LCVNESCCDMLLLQNVCVNTQEYDQF 128
           L + ++CCD +LL N+ +N++ +D F
Sbjct: 811 LRLRQACCDPVLLSNMTINSETFDDF 836


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 255 CVLNEHTKINCM*CTFSGVALCLFIDSRNLQSCNYFGVPKMSQKDTA 395
           C+L  H  I C  C     A C  +D R   +     +P++S  DT+
Sbjct: 241 CLLAPHEVICCAFCPDRDGAFCTTLDGRWCHTICAIAIPEISFHDTS 287


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 505 GGIPTPFEDWSLVFTTSNGH 446
           GGIP  F+DW + +T    H
Sbjct: 441 GGIPISFKDWMISYTNRQKH 460


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 450 PLEVVKTRLQSSKGVGIPPTQP 515
           PL+VVKTRLQS        TQP
Sbjct: 44  PLDVVKTRLQSESISQYSSTQP 65


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 120 DQFLRQRKSDLLHLLDFNINTCNK 191
           D+FL   K DL+HL   N N C K
Sbjct: 360 DEFLVLSKLDLMHLSVSNDNDCGK 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,585
Number of Sequences: 5004
Number of extensions: 60191
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)