Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A09
         (945 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33252| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        30   2.4  
SB_45206| Best HMM Match : SAM_2 (HMM E-Value=2.8e-05)                 29   5.5  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          29   7.2  
SB_22485| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_33252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 465 KTRLQSSKGVGIPPTQPPPSDNTANNRKICSKIPKHQEAKWGYRRTMG 608
           K + +++   G PP   PP   TA  RK    + K + + W    ++G
Sbjct: 131 KKKKKTATAAGFPPPTQPPRGMTATARKSKRNVAKSKRSSWTMTSSIG 178


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 498 IPPTQPPPSDNTANNRKICSKIPKHQEAKW 587
           +PPTQPP +D  AN +   S  PK +   W
Sbjct: 794 VPPTQPPVTDAPANCKDTYSGCPKWKGYGW 823



 Score = 28.7 bits (61), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 498 IPPTQPPPSDNTANNRKICSKIPKHQEAKW 587
           +PPTQPP +D  A+ + I S  P+ +   W
Sbjct: 719 VPPTQPPVTDAPAHCKDIYSDCPEWKGWGW 748


>SB_45206| Best HMM Match : SAM_2 (HMM E-Value=2.8e-05)
          Length = 169

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 684 PSRTAVPDNCTTSAYDLLACCMRTSHPLYVCSPI--WPPDV*VSW 556
           P+ +A+   C T  YD LA  + ++ PL V  P+  W P+    W
Sbjct: 28  PAHSALQYTCYTFVYDTLAMILTSTEPL-VSKPVTSWTPEDVSKW 71


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 26/64 (40%), Positives = 34/64 (53%)
 Frame = -3

Query: 220 SNTIFLQRSDLLQVFILKSSKCSKSDFLCRRNWSYS*VFTHTF*SSNISQQDSLTHNSNL 41
           S ++FL  S  L VF+  SS  S SDFL   + S S      F +S+ S  D LT +S+L
Sbjct: 808 SLSVFLTSSSSLSVFLTSSS--SLSDFLTSSS-SLS-----DFLTSSSSLSDFLTSSSSL 859

Query: 40  KGFP 29
             FP
Sbjct: 860 SVFP 863


>SB_22485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -2

Query: 725 CMYELILTCPGVSSPRVLLYLTIVRHQHT-----ICLLAVCEHRTHCTSVAPFGL 576
           C+Y LIL C    +  V+L + + R   T     I  LA C+  T  +S+ PF L
Sbjct: 32  CVYLLILLCSASGNTLVILSVVLFRRMKTVPNMFIANLAACDFVTTVSSI-PFDL 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,641,515
Number of Sequences: 59808
Number of extensions: 457037
Number of successful extensions: 1200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2764790632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)